Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12670 934 / 0 EMB2742 embryo defective 2742, CTP synthase family protein (.1) AT1G30820 889 / 0 CTP synthase family protein (.1) AT4G20320 874 / 0 CTP synthase family protein (.1.2) AT2G34890 792 / 0 CTP synthase family protein (.1) AT4G02120 776 / 0 CTP synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G080100 [exp] 1073 / 0 AT3G12670 929 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.003G157900 [exp] 932 / 0 AT1G30820 910 / 0.0 CTP synthase family protein (.1) Potri.001G073100 [exp] 926 / 0 AT1G30820 901 / 0.0 CTP synthase family protein (.1) Potri.014G123200 [exp] 800 / 0 AT4G02120 918 / 0.0 CTP synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001218 [exp] 821 / 0 AT1G30820 894 / 0.0 CTP synthase family protein (.1) Lus10038403 [exp] 816 / 0 AT1G30820 897 / 0.0 CTP synthase family protein (.1) Lus10025042 [exp] 587 / 0 AT4G02120 689 / 0.0 CTP synthase family protein (.1) Lus10010020 [exp] 529 / 0 AT4G02120 624 / 0.0 CTP synthase family protein (.1) Lus10025043 [exp] 211 / 2e-65 AT4G02120 289 / 1e-96 CTP synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06418 [poplar] [flax] CTP_synth_N CTP synthase N-terminus CL0014 [poplar] [flax] Glutaminase_I PF07722 [poplar] [flax] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Potri.010G176500.2 pacid=42798766 polypeptide=Potri.010G176501.1.p locus=Potri.010G176500 ID=Potri.010G176500.2.v4.1 annot-version=v4.1 ATGAAGTACGTATTGGTTACTGGTGGTGTGGTTAGTGGACTTGGCAAAGGTGTTACAGCCAGTAGTATTGGTCTTCTCCTCAAAGCCTGTGGCCTTCGAG TTACTTCTATTAAGATTGACCCTTACCTAAATACTGATGCGGGCACTATGTCTCCTTTTGAGCATGGGGAGGTCTTTGTCTTAGATGATGGCGGCGAGGT GGATTTGGACCTTGGTAACTATGAGCGTTTTCTAGACATTAAGTTAACCCGTGACAATAATATCACCACTGGAAAAATATACCAGTCTGTTCTCGAGAAG GAGAGGAGAGGAGATTATCTTGGAAAGACTGTGCAGGTAGTTCCACACATCACGGATGCCATCCAAGAGTGGATAGAGCGTGTAGCCTTCATACCAGTGG ATGGAAAAGAAGGTCCAGCTGATGTTTGTGTCATTGAACTTGGTGGAACTATAGGGGACATTGAATCGATGCCGTTTATTGAGGCACTCGGCCAGTTCTC TTATCACGTGGGCCCTGGAAATTTCTGCTTGATCCATGTCAGCCTGGTACCTGTTCTTAATGTTGTTGGTGAACAGAAAACGAAGCCTACCCAGCATAGT GTTAGGGGGCTTAGAGGACTTGGATTGACTCCGAACATTCTAGCTTGTCGCAGCACAAAGGCACTCGAAGACAATGTTAAGGCCAAACTATCCCAGTTTT GTCATGTGGCAGCTGAAAACATACTCACCCTGTATGATGTCCCAAACATCTGGCACATTCCTCTGCTTCTAAGAGATCAGAAGGCACATGAAGCAATCTT AAAAGGACTGAACCTTCTAGGTGTTGCCAGGGAGCCTGATTTACAGGAGTGGACTGCTAGGACAAGAGTCTATGACATACTGCATGAACCTGTTAGAATT GCCATGGTTGGAAAATATACTGGACTTTCAGATTCTTACCTCTCTGTTTTGAAGGCTCTTTTGCATGCTTCTGTCGCTTGCCGGCGGAAGCTTGTTGTAG AATGGGTTGCTGCAGGTGATCTTGAAGATGTTACTGCTAAAGAGGCACCTGATGTTTATAAAAATGCTTGGGATCTTTTGAAGGGATCCGATGGTGTTCT AGTTCCAGGAGGGTTTGGTGATAGAGGGGTTCAAGGAAAAATTCTTGCTGCTAAGTATGCTCGTGAGAACAAAGTTCCATTTCTGGGCATTTGTCTGGGG ATGCAAATTGCTGTTATTGAATTTGCACGATCTGCTCTTGGTTTGCATGACGCAAACAGTACAGAATTTGATCCTGAAACTTCCCATCCTTGTGTCATTT TTATGCCAGAGGGTTCAAAAACTCACATGGGGGGAACTATGCGTTTGGGGTCAAGGAGGACTTATTTCAAAGTTCCGAATTGCAAATCTGCAAAGTTGTA CAGCAATGCCAGTTTTGTTGATGAGCGTCATCGGCATAGATATGAGGTCAATCCAAACATGGTACCACAATTTGAAAATGCTGGTCTATCATTTGTTGGC AGAGATGAAACTGGTCAGCGCATGGAGATCATTGAACTACCGAGTCATCCATACTTTGTTGGTACCCAGTTCCATCCTGAATTCAAGTCAAGGCCAGGAA AACCTTCGGCTCTTTTCTTAGGACTTATAGCAGCAGCAAGTGGGCAGTTGGATGCTGTCTTACAAAATTATGGTCATGAAAATAAGCTATTGCCAAATGG AATAAGCAATGGAAAACCATCAGTGAAAACCTACCAAAACGGGAATGCCATTAAGTCTTCCAATGGATCACTAAATGGTGTATATAGCAATGGCAATGGC AATGGCGTGCACCATTAA
AA sequence Show only first row Show all	>Potri.010G176500.2 pacid=42798766 polypeptide=Potri.010G176501.1.p locus=Potri.010G176500 ID=Potri.010G176500.2.v4.1 annot-version=v4.1 MKYVLVTGGVVSGLGKGVTASSIGLLLKACGLRVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDIKLTRDNNITTGKIYQSVLEK ERRGDYLGKTVQVVPHITDAIQEWIERVAFIPVDGKEGPADVCVIELGGTIGDIESMPFIEALGQFSYHVGPGNFCLIHVSLVPVLNVVGEQKTKPTQHS VRGLRGLGLTPNILACRSTKALEDNVKAKLSQFCHVAAENILTLYDVPNIWHIPLLLRDQKAHEAILKGLNLLGVAREPDLQEWTARTRVYDILHEPVRI AMVGKYTGLSDSYLSVLKALLHASVACRRKLVVEWVAAGDLEDVTAKEAPDVYKNAWDLLKGSDGVLVPGGFGDRGVQGKILAAKYARENKVPFLGICLG MQIAVIEFARSALGLHDANSTEFDPETSHPCVIFMPEGSKTHMGGTMRLGSRRTYFKVPNCKSAKLYSNASFVDERHRHRYEVNPNMVPQFENAGLSFVG RDETGQRMEIIELPSHPYFVGTQFHPEFKSRPGKPSALFLGLIAAASGQLDAVLQNYGHENKLLPNGISNGKPSVKTYQNGNAIKSSNGSLNGVYSNGNG NGVHH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12670		EMB2742	embryo defective 2742, CTP syn...		Potri.010G176500 [exp]	0	1
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Potri.007G035300 [exp]	15.16	0.7302
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.008G133200 [exp]	17.97	0.7382
AT3G10650		AtNUP1	unknown protein		Potri.008G014800 [exp]	19.89	0.7995
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Potri.009G168100 [exp]	20.68	0.7900
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G072800 [exp]	20.78	0.7367
AT5G58270		ABCB25, ATATM3,...	STARIK 1, ARABIDOPSIS THALIANA...		Potri.013G160500 [exp]	22.22	0.7474	STA1.2
AT4G23540			ARM repeat superfamily protein...		Potri.006G050000 [exp]	27.16	0.7626
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.017G042500 [exp]	29.91	0.7871
AT2G03810			18S pre-ribosomal assembly pro...		Potri.010G138100 [exp]	32.40	0.7422
AT1G67120			ATPases;nucleotide binding;ATP...		Potri.017G039100 [exp]	39.15	0.7756

Compare expression of checked genes

Potri.010G176500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.