Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79580 344 / 8e-118 NAC ANAC033, SMB, NST6 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G32770 253 / 3e-82 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT1G33280 244 / 2e-79 NAC BRN1, ANAC015, NST5 BEARSKIN 1, NAC domain containing protein 15 (.1) AT2G46770 246 / 3e-79 NAC NST1, ANAC043, EMB2301 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT4G10350 243 / 1e-78 NAC BRN2, NST4, ANAC070 BEARSKIN 2, NAC domain containing protein 70 (.1) AT4G36160 238 / 2e-76 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT3G61910 234 / 2e-75 NAC NST2, ANAC066 NAC SECONDARY WALL THICKENING PROMOTING FACTOR2, NAC domain protein 66 (.1) AT2G18060 234 / 1e-74 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT5G66300 219 / 7e-70 NAC ANAC105, VND3 VASCULAR-RELATED NAC-DOMAIN 3, Arabidopsis NAC domain containing protein 105, NAC domain containing protein 105 (.1) AT1G12260 221 / 3e-69 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G080000 [exp] 598 / 0 AT1G79580 333 / 2e-113 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.014G104800 [exp] 263 / 6e-86 AT2G46770 380 / 3e-131 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G178700 [exp] 259 / 2e-84 AT2G46770 366 / 1e-125 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G153300 [exp] 251 / 9e-81 AT2G46770 297 / 4e-98 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.001G448400 [exp] 247 / 3e-79 AT1G32770 295 / 4e-97 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Potri.013G092400 [exp] 240 / 2e-77 AT4G10350 436 / 5e-154 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.019G066000 [exp] 239 / 7e-77 AT4G10350 451 / 8e-160 BEARSKIN 2, NAC domain containing protein 70 (.1) Potri.007G014400 [exp] 235 / 6e-75 AT2G18060 427 / 1e-149 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) Potri.005G116800 [exp] 232 / 5e-74 AT2G18060 441 / 2e-155 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009939 [exp] 338 / 3e-117 AT1G79580 314 / 4e-107 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10030143 [exp] 278 / 2e-92 AT1G79580 279 / 1e-91 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Lus10030205 [exp] 248 / 2e-79 AT2G46770 357 / 5e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033239 [exp] 247 / 4e-79 AT1G32770 318 / 2e-106 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10002687 [exp] 247 / 5e-79 AT2G46770 358 / 1e-121 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10039153 [exp] 244 / 6e-78 AT4G10350 327 / 4e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10017340 [exp] 241 / 5e-77 AT2G46770 347 / 7e-118 NAC SECONDARY WALL THICKENING PROMOTING FACTOR1, Arabidopsis NAC domain containing protein 43, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10013782 [exp] 240 / 9e-77 AT4G10350 325 / 5e-110 BEARSKIN 2, NAC domain containing protein 70 (.1) Lus10001664 [exp] 240 / 1e-76 AT1G32770 343 / 2e-116 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) Lus10008271 [exp] 223 / 1e-72 AT1G32770 277 / 8e-94 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.010G176600.2 pacid=42798403 polypeptide=Potri.010G176600.2.p locus=Potri.010G176600 ID=Potri.010G176600.2.v4.1 annot-version=v4.1 ATGATGGCAGGAAACGGACAACTATCAGTTCCTCCAGGTTTCAGATTCCATCCAACAGATGAAGAGCTTCTGTACTATTATCTGAGGAAGAAGGTCTCGT ATGAAGCCATTGACCTGGATGTTATCAGGGAGGTGGACCTCAATAAACTTGAGCCATGGGATCTCAAAGATAAATGCAGGATTGGTTCGGGTCCTCAAAA TGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATATCCAACCGGGACTCGAACAAACCGGGCAACCACCGCAGGCTTTTGGAAAGCAACGGGAAGGGAT AAGGCCATCCATCTTAGCAACTCTCAGAGGATTGGTATGAGAAAAACCCTAGTCTTCTACACTGGACGTGCTCCTCATGGTCAAAAGACTGATTGGATCA TGCATGAGTACCGCTTGGATGATGACAACTCTGAGGTTCAGGAAGATGGCTGGGTTGTCTGTAGGGTTTTCAAGAAGAAGAATCAAACTAGAGGTTTCCT ACCAGAAGTTTCTCAAGAAGAACACTTCTCTCAAATGAAGGCTAGCGCTTCTTCTCTTCCACTGGAGCCAAAACAAAACCATATGCAATCAATTTATGAT GACTATACCTTTGATGGCTCCATGCATCTCCCACAGTTATTTAGTCCGGAATCAGCTGTTGCCCCATCATTTGTATCACCTCTCTCTTTGAACAACATGG ACGACATTGAGTGCTCACAGAACTTGTTGAGGTTAACATCTACTGGTTGTGGACTTGTGCAGCCTGCAGGGAGGTTCAATGGTGATTGGTCATTTCTGGA TAAGCTTCTTGCTTCTCAACAAAACCTGGATCATCATCAGCACTACCAAAACAAAGGCAATTCTTCATCCCAAATTGTTGACCATGTGGGTGCTTCAACT CAGAAATTCCCATTTCAATACCTTGGCTTTGAGACTGACATTCTGAGATTTTCGAAGTAG
AA sequence Show only first row Show all	>Potri.010G176600.2 pacid=42798403 polypeptide=Potri.010G176600.2.p locus=Potri.010G176600 ID=Potri.010G176600.2.v4.1 annot-version=v4.1 MMAGNGQLSVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRD KAIHLSNSQRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDNSEVQEDGWVVCRVFKKKNQTRGFLPEVSQEEHFSQMKASASSLPLEPKQNHMQSIYD DYTFDGSMHLPQLFSPESAVAPSFVSPLSLNNMDDIECSQNLLRLTSTGCGLVQPAGRFNGDWSFLDKLLASQQNLDHHQHYQNKGNSSSQIVDHVGAST QKFPFQYLGFETDILRFSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.010G176600 [exp]	0	1
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.018G095900 [exp]	1.00	0.9900
AT4G22810	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G115200 [exp]	1.73	0.9736
					Potri.017G122100 [exp]	3.46	0.9703
AT3G21680			unknown protein		Potri.002G229300 [exp]	4.47	0.9593
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.008G080000 [exp]	5.19	0.9596
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.003G205700 [exp]	5.47	0.9640	RAP23
AT4G34419			unknown protein		Potri.009G102800 [exp]	5.47	0.9661
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	6.92	0.9562
AT1G15385			unknown protein		Potri.003G062300 [exp]	7.48	0.9603
AT3G29034			unknown protein		Potri.010G234200 [exp]	8.83	0.9562

Compare expression of checked genes

Potri.010G176600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.