Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27850 86 / 8e-18 unknown protein AT2G40070 83 / 8e-17 unknown protein AT3G09000 57 / 9e-09 proline-rich family protein (.1) AT3G08670 54 / 9e-08 unknown protein AT2G38160 48 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G190300 [exp] 88 / 1e-18 AT2G40070 368 / 6e-121 unknown protein Potri.008G066900 [exp] 87 / 2e-18 AT2G40070 321 / 1e-102 unknown protein Potri.010G056200 [exp] 82 / 3e-16 AT1G27850 240 / 1e-64 unknown protein Potri.008G178600 [exp] 66 / 2e-11 AT1G27850 567 / 0.0 unknown protein Potri.016G114900 [exp] 62 / 3e-10 AT2G40070 352 / 7e-114 unknown protein Potri.016G139500 [exp] 49 / 7e-06 AT3G08670 245 / 2e-73 unknown protein Potri.006G110700 [exp] 42 / 0.0008 AT3G08670 251 / 1e-75 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024526 [exp] 147 / 6e-40 AT2G40070 66 / 2e-11 unknown protein Lus10006433 [exp] 89 / 1e-18 AT1G27850 501 / 1e-158 unknown protein Lus10011374 [exp] 86 / 1e-17 AT2G40070 151 / 8e-37 unknown protein Lus10040188 [exp] 81 / 3e-16 AT2G40070 533 / 0.0 unknown protein Lus10004390 [exp] 74 / 1e-14 AT2G40070 321 / 5e-107 unknown protein Lus10030402 [exp] 73 / 2e-13 AT2G40070 561 / 0.0 unknown protein Lus10027767 [exp] 72 / 3e-13 AT2G40070 288 / 5e-86 unknown protein Lus10037838 [exp] 71 / 6e-13 AT2G40070 551 / 0.0 unknown protein Lus10035528 [exp] 71 / 7e-13 AT2G40070 280 / 4e-83 unknown protein Lus10004824 [exp] 68 / 4e-12 AT3G09000 286 / 3e-90 proline-rich family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G177000.3 pacid=42798590 polypeptide=Potri.010G177000.3.p locus=Potri.010G177000 ID=Potri.010G177000.3.v4.1 annot-version=v4.1 ATGAAAGGTAGCAGCAGGAAAGTCCCAGGCATGCCATTCATCAAAGGAAGGAAGGACAGAGATGAGGATCTTCTTCTGTTCAAGGAATTGCAAAGACGCG AAAAAGACCGGCTTGCCTGTCTCCTTCAGCCTGTTTCTGATGAGTTTGAGCCTAATATTGCTGGGAATCATACACTCTATAGAATTGCATCTGGCAGGAA AGGTTCTGTATACGAATCGTTTGGCGAAAACGATAAAAATGATTATGACTGGTTGAAAACGCCGCCAGCAACTCCTCTGTTCCCTTCCCTAGAAATGGAA GCGAACGCCCCGGGAAATATTGTCCAACGGGAGATACCGATAATTCAACCTCTCTCGAGGTTTGCAGACAATACAGACGCATTGAAGGGAAGTACTGTAA CACTAAGGACTCCAAATTCAAAACCTAATAGGATCCCTCAAAGATCAGTAACCCCAGGTCAAAAACAAAGAATCTCAACATCAACTGAAAATAAGAACAG CAAGGTAGCAGCACAAATTCTGAACCAGAAAATGGCCCAATTCACAACAGATCCGAATAGAAAAACAAATGTGATTGCAAACTCAGCCAAACCCACTAAC CAAAAATCAAGTCAAACCAATTTCCTGTCCTCGAACCTTTCCAAGGATATAAAAACAAAGCCTGAAAATAGAGGTGTGTCGCCTTCTGTCAGGTCAACAA TTGCAGCTCAAATTCCAGGATTTTCCAATGACACGCCTCCTAATCTTAGGACAGATCGTGCAACTTCTGCTACTAGGGGCAGACCTGTTGCAGCCAATCC AACAGCGTCAGTTCGTCAAAAACAAGACCCCGCTCCAAGGCCACGAAGGCAATCCTGCTCACCAAGTGTGACAAGGGGTCGAAAAGAGAGCAATGAAGAA AACTTGACCACTTCAAAAGGGAAAACTGTAACAGGAAATAATGGAGCTCAAATTTTCGGAAGCAGAATGGTAGACAAGGTAATGAATGCTAGAAAATTGG GAGCTGAAGAAAGAGAAGCCAAGCCAAAGCAGCAAAGTGCTACTAAATCTGCTAATAGTAGTGCTAATGCAAGTCCTAGTCATGGTTTTGGCAGGATGAT GACGACGACTAAGAGCCAAATGGACATGGCTTTCAAGCATATGGTGATAGCAAAAGATCGGATCAATTCTCGTCACCTTGGCATTACCTCTGGCAGAAGC TGTGGCCAGAATGAGCTCGACTAG
AA sequence Show only first row Show all	>Potri.010G177000.3 pacid=42798590 polypeptide=Potri.010G177000.3.p locus=Potri.010G177000 ID=Potri.010G177000.3.v4.1 annot-version=v4.1 MKGSSRKVPGMPFIKGRKDRDEDLLLFKELQRREKDRLACLLQPVSDEFEPNIAGNHTLYRIASGRKGSVYESFGENDKNDYDWLKTPPATPLFPSLEME ANAPGNIVQREIPIIQPLSRFADNTDALKGSTVTLRTPNSKPNRIPQRSVTPGQKQRISTSTENKNSKVAAQILNQKMAQFTTDPNRKTNVIANSAKPTN QKSSQTNFLSSNLSKDIKTKPENRGVSPSVRSTIAAQIPGFSNDTPPNLRTDRATSATRGRPVAANPTASVRQKQDPAPRPRRQSCSPSVTRGRKESNEE NLTTSKGKTVTGNNGAQIFGSRMVDKVMNARKLGAEEREAKPKQQSATKSANSSANASPSHGFGRMMTTTKSQMDMAFKHMVIAKDRINSRHLGITSGRS CGQNELD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40070			unknown protein		Potri.010G177000 [exp]	0	1
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	1.41	0.9699
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038401 [exp]	1.41	0.9734
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G201000 [exp]	7.00	0.9507
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.001G106900 [exp]	7.74	0.9275
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.005G078801 [exp]	9.00	0.9592
					Potri.018G119400 [exp]	9.48	0.9507
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143700 [exp]	9.74	0.9369	GRAS75
AT1G78830			Curculin-like (mannose-binding...		Potri.011G066200 [exp]	11.22	0.9372
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G029000 [exp]	11.31	0.9387
AT1G14540			Peroxidase superfamily protein...		Potri.008G022248 [exp]	14.14	0.9367

Compare expression of checked genes

Potri.010G177000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.