Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16300 1487 / 0 Vps51/Vps67 family (components of vesicular transport) protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079700 [exp] 1917 / 0 AT5G16300 1360 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041337 [exp] 1491 / 0 AT5G16300 1382 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein Lus10037382 [exp] 1008 / 0 AT5G16300 868 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF08700 [poplar] [flax] Vps51 Vps51/Vps67
Representative CDS sequence Show only first row Show all	>Potri.010G177200.2 pacid=42798545 polypeptide=Potri.010G177200.2.p locus=Potri.010G177200 ID=Potri.010G177200.2.v4.1 annot-version=v4.1 ATGAGAGTATCTACCCCCTCCGTCACCGACGAACGCGCCGCCACGCTAAGCGGCGGAGGCTACCGAGACGCCGAATCACTGTTCCGTACCAAAGCAATCC CCGAAATTCGCAATGTCGAATCGGAAACGCGACAACAAATCGAAGAAAAGAAAGAAGAGCTTCGTCAATTAGTCGGTAACCGATATCGTGACCTAATTGA TTCGGCCGATTCTATCGTTCACATGAAATCCTATTGCGAATCAATCTCTCGCAATATCGCGTCGATTCACACCAACATTCGCTCTCTTTCCGCTTCTCCG TTATCAGAAACCCCCAAATTCACAAGCCCTAACTCTACTCGTGGTGACAGCTATGGGATCGCATGTCGGGTCAAGTATTTAGTTGATACCCCGGAGAATA TCTGGGGATGTTTGGACGAATTTATGTTTTTGGAGGCAGCAGGGAGGTATACACGTGCAAAACACGTACAGAGTAAGTTGATGAATAGGGATTATAATAA GATCTTGTTGAATTTTCCACTCTTGCAGCATCAATGGCAGATTGTGGAGAGTTTTAAAGCGCAGATTTCGCAGAAGAGTCGCGAGAGGTTGTCAGATCAA GTATTGGAAATTGGGGGCTATGCGGATGCGTTGGCTGCGGCTGCAGTGATTGATGAATTGGAGCCTGATCAGGTATTGTGTTTGTTTCTTGATAGTAGAA AGTCGTGGATTTTGCAAAAATTAGGGGGTTTTGGTGGGGTTGATGTAAAAAATGATATTGTCAGTGGTGAGGTTGTCGTTTTTGTGTTTTGTGAAGTGTT AAAGATAATTCAAGTTAGTGTGGGACAAGTAGGGGAGTTGTTTTTGCAAGTTTTGAATGATATGCCTTTGTTTTATAAAGTTATTTTGAGTTCTCCTCCC GCTTCCCAATTGTTTGGGGGGATTCCGAATCCGGATGAGGAAGTGAGATTGTGGAAACTGTTTAGGGAAAAGCTCGAGTCTGTGAATGCTGCTCTCGATA AAGAATATATTGCCAGGACTTGTATGAGTTGGTTGAGGGATTGTGGTGGACAGATTGTGAGTAAGATTAATGGGAAGTTCTTGATTGATGCGATTGCTAC TGGTGGAGAGCTTGCAGTGGCCGAGAAGATGATCAGGGAGACTATGGATAGTAAGCAAGTATTGGAGGGAAGTTTGGAGTGGCTCAAGAGTGTTTTCGGG TCTGAGATTGAGTTGCCTTGGAGCAGGATTCGAGAGTTAGTTTTAGAAGATGACTCAGATCTCTGGGATGAGATATTTGAAGGTGCTTTTGTTCAGAGGA TGAAAACTATTATCATATCACGATTTGAGGATTTGGTCAGAGCTATCAATTTGGGAGAGTCCATTTGTGCAACTGGGGAGACTCCTGGTGAACAGATTGA CTTTCAGGCATACTTGAACAGACCATCCACAGGAGGTGGGGTTTGGTTTATTGAACCCAATACAAAGAAGTCTGGTCTAGGTCTTGGTCATAAAGCATCG CCTGAAGAAAATGATTTTCATAGTTGTCTTAGTGCATACTTTGCTCCTGAAGTCAGTCGAATCAGAGATGCAGTGGACAGCTGTTGTCAAAGTGTTCTTG AGGACCTGCTCAGTTTCTTAGAATCTCCAAAGGCAGCTCTCAGGATAAAGGATTTGGCACCATTTTTACAGGACAAGTGTTATGAGAGCATTTCAACCAT ATTGACAGAACTCAAGAGGGAGCTTGATAGTTTATATGCTGCAATGGGGAATGCCAACAATGTTGGACAGCGTGTGCCTCCTGCCATAGTTGTTGAGAAA TCTCTTTACATTGGGCGACTCTTGTTTGCATTTCAAAACCACTCAAAACACATTCCAGTGATACTGGGCTCTCCAAGGTTTTGGGCCAAAGATACCATGG CTGCAGTTTTTGATAAGTTACCATCGGTATTGAGGCAATCTAGATTTGCGAATGAGTATCCTATCCCTGACAGTCCTGGCAGGCAATCTCCCACCAGCTC TAAAAGACAGAGCTCATCTGCCACTGCTGCTTTGCGTGGAGCAAATGAAAGTGCAAGCCCTAAACTTGAAGAATTAGGCAGGATCATGAAGGATCTTTGC ATCAGAGCTCACAATTTATGGATATCCTGGTTATCTGATGAGCTTTCAGCCATTCTTGCTCGGGATCTTGGAAAAGATGATGGATTATCGGCAACAACTC CCTTGAGGGGCTGGGAAGAGACAGTAGTCAAGCAAGAACAATCTGATGAGAGTCAAGCTGAAATGAAAATTTCACTCCCATCCATGCCTTCACTCTATAT CATCTCTTTTCTGTTTCGGGCATGTGAAGAAATCCATAGAATTGGAGGTCATGTACTTGACAAATCAATTCTGCAAAAATTTGCTTCAAGCCTATTGGAG AAGGTTATTGAAATTTATGAGGACTTCCTTTCCTCAAGAGAGTCTCATCAGTCTCAAGTGTCAGAGAAAGGAGTTCTTCAAATTCTATTAGACCTAAGAT TTGCTGCTGATGTTCTCTCTGGTGGCGATTGTAATATTAATGAGGAGATATCTAGAAATCCAAAGGTGAAAGTTCCTTTCAGACGGAAGCAGGAGCAAAG CCAGATGAAATCAGTCTCTAGAGAGCGTATTGATGGGTTAATCAATCGTTTTTCACAGAGACTTGATCCCATAGATTGGCTTACGTATGAGCCATACCTG TGGGAGAATGAGAGGCAGTCATACTTACGGCATGCTGTCCTTTTTGGGTTCTTTGTTCAGCTAAACCGGATGTACACTGATACAATGCAGAAACTACCTT CTAATCCAGAGTCAAATATCATGAGATGCTCTACTGTTCCTCGCTTTAAATACCTTCCAATAAGTGCGCCAGCATTGTCTTCAAGAGGGACAACAAAGAC ATCCATTCAAAGAACTGCAGATGATATTTCTTCAAGAAGTTCTTGGAAAGCTTATACCAAGGGAGAGCTTTCTCGAAATATTGATTTGGATGAAAACACT AGTTTTGGTGTAGCAGCACCCATTTTGAAGTCTTTCATGCAGGTCGGAAGCAGGTTTGGAGAGAGCACCTTAAAATTGGGATCTATGTTAACTGATGGGC AAGTAGGCATATTCAAAGACAGATCAGCAGCTGCCATGTCAACATTTGGTGATATTTTACCCGTCCAAGCAGCTGGCCTTCTTTCATCATTTACAGCTAC CAGATCAGACTCTTGA
AA sequence Show only first row Show all	>Potri.010G177200.2 pacid=42798545 polypeptide=Potri.010G177200.2.p locus=Potri.010G177200 ID=Potri.010G177200.2.v4.1 annot-version=v4.1 MRVSTPSVTDERAATLSGGGYRDAESLFRTKAIPEIRNVESETRQQIEEKKEELRQLVGNRYRDLIDSADSIVHMKSYCESISRNIASIHTNIRSLSASP LSETPKFTSPNSTRGDSYGIACRVKYLVDTPENIWGCLDEFMFLEAAGRYTRAKHVQSKLMNRDYNKILLNFPLLQHQWQIVESFKAQISQKSRERLSDQ VLEIGGYADALAAAAVIDELEPDQVLCLFLDSRKSWILQKLGGFGGVDVKNDIVSGEVVVFVFCEVLKIIQVSVGQVGELFLQVLNDMPLFYKVILSSPP ASQLFGGIPNPDEEVRLWKLFREKLESVNAALDKEYIARTCMSWLRDCGGQIVSKINGKFLIDAIATGGELAVAEKMIRETMDSKQVLEGSLEWLKSVFG SEIELPWSRIRELVLEDDSDLWDEIFEGAFVQRMKTIIISRFEDLVRAINLGESICATGETPGEQIDFQAYLNRPSTGGGVWFIEPNTKKSGLGLGHKAS PEENDFHSCLSAYFAPEVSRIRDAVDSCCQSVLEDLLSFLESPKAALRIKDLAPFLQDKCYESISTILTELKRELDSLYAAMGNANNVGQRVPPAIVVEK SLYIGRLLFAFQNHSKHIPVILGSPRFWAKDTMAAVFDKLPSVLRQSRFANEYPIPDSPGRQSPTSSKRQSSSATAALRGANESASPKLEELGRIMKDLC IRAHNLWISWLSDELSAILARDLGKDDGLSATTPLRGWEETVVKQEQSDESQAEMKISLPSMPSLYIISFLFRACEEIHRIGGHVLDKSILQKFASSLLE KVIEIYEDFLSSRESHQSQVSEKGVLQILLDLRFAADVLSGGDCNINEEISRNPKVKVPFRRKQEQSQMKSVSRERIDGLINRFSQRLDPIDWLTYEPYL WENERQSYLRHAVLFGFFVQLNRMYTDTMQKLPSNPESNIMRCSTVPRFKYLPISAPALSSRGTTKTSIQRTADDISSRSSWKAYTKGELSRNIDLDENT SFGVAAPILKSFMQVGSRFGESTLKLGSMLTDGQVGIFKDRSAAAMSTFGDILPVQAAGLLSSFTATRSDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16300			Vps51/Vps67 family (components...		Potri.010G177200 [exp]	0	1
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	1.00	0.8776
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Potri.010G052600 [exp]	2.00	0.8444
AT5G16300			Vps51/Vps67 family (components...		Potri.008G079700 [exp]	2.82	0.8672
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078800 [exp]	4.89	0.7947	GN.2
AT3G60860			SEC7-like guanine nucleotide e...		Potri.014G070600 [exp]	6.48	0.8280
AT4G32160			Phox (PX) domain-containing pr...		Potri.018G026000 [exp]	7.34	0.8189
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.002G074400 [exp]	16.09	0.7810
AT2G41770			Protein of unknown function (D...		Potri.006G051000 [exp]	16.15	0.8464
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.014G151300 [exp]	25.69	0.7848
AT1G21630			Calcium-binding EF hand family...		Potri.005G102200 [exp]	26.72	0.7124

Compare expression of checked genes

Potri.010G177200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.