Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65580 1489 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 1311 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G43900 1306 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT2G31830 1177 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT4G18010 127 / 5e-30 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT1G71710 124 / 5e-29 DNAse I-like superfamily protein (.1.2) AT3G63240 123 / 6e-29 DNAse I-like superfamily protein (.1) AT2G32010 116 / 1e-26 CVL1 CVP2 like 1 (.1.2) AT5G65090 115 / 1e-26 DER4, MRH3, BST1 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2) AT1G34120 114 / 8e-26 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G079300 [exp] 1944 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.017G006900 [exp] 1381 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.007G145100 [exp] 1327 / 0 AT2G43900 1511 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Potri.003G088300 [exp] 125 / 2e-29 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.001G145900 [exp] 125 / 3e-29 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.010G101700 [exp] 119 / 4e-28 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.010G084300 [exp] 115 / 4e-26 AT2G32010 865 / 0.0 CVP2 like 1 (.1.2) Potri.008G011000 [exp] 110 / 4e-25 AT5G04980 534 / 0.0 DNAse I-like superfamily protein (.1.2) Potri.017G074200 [exp] 110 / 6e-25 AT2G37440 328 / 8e-108 DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041607 [exp] 1670 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10008330 [exp] 1208 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10027073 [exp] 1199 / 0 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024112 [exp] 877 / 0 AT1G65580 733 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024113 [exp] 814 / 0 AT1G65580 672 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10006597 [exp] 119 / 1e-28 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 120 / 1e-27 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10028697 [exp] 119 / 2e-27 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028727 [exp] 115 / 5e-26 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10034857 [exp] 103 / 1e-22 AT5G04980 530 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.010G177400.8 pacid=42799274 polypeptide=Potri.010G177400.8.p locus=Potri.010G177400 ID=Potri.010G177400.8.v4.1 annot-version=v4.1 ATGGACCCAAACGACGACGTTTTCTTCTCCGTTCACTCTCCATCTTCCCAAATCAACAACAACGATGATTCTTCTTCGTCTTCACCTCCGGTCCGAACGC CCAAGATCTTCGACCGTTACATTTCCTCCTCAATCTCATCACCATCCTCATCCGACTACGAGGACGATTTACAGCCCTCCAACTCCATCTCCTCCTTGGA AGCCTCCACTAAACGCCTCGATTACATGATCCAATTCCTCGACCGCAAACTCTCCAACAACACCACAACCAATACCTCAAACAACGACAGTGTTTCCCAC ACACACAAAACTCTCGGTTTACCCGAATTCATCGGCAAAGGAGGAGGAGCCGGAATTTTCCGTGTCCCGGTTCGAGCTGCGGTTCACCCAGACCGTCCAC CGAGTCTCGAAATTCGGCCACATCCATTGAGAGAATCTCAAATTGGTCGGGTTTTGAGAACGATTGTAACCACCGAGAATCAACTATGGGGTGGGAGAGA AAACGGTGCCGTTCAGGTCTGGGAATTGAAGGAAATGTACGGTGGGAGTGATGAAACGGCGCCGTGCGAGGAGTCTGTGGCTTTGACTTCGGGTTCCGGT GTTACGTGTTTGATTGGCGATGAAGGGAGTCGAGTTGTTTGGAGTGGGCATATAGATGGCAGAATCCGGTGTTGGAAAATGGATCCAGGTCCGGATTCGG ATTCAAGTCGGGTCAGGGAGGTCTTGTCTTGGGCCGCACATCGTGGGCCAGTCATGTCCATGATCATGACTTGCTATGGGGATTTGTGGTCGGGATCGGA GGGCGGAGTTATTAAGATATGGCCATGGGAAGCGCTGGAAAAGGCCTTTTCATTCACGGCTGAAGAGAGGCACATGGCTGCATTGTTAGTGGAGAGGTCA TTTATTGATCCAAGGAACCAAGTGACTGCGAATGGATTAAGCAATGTGTTGAACTCCGATGTTAAACACTTGCTTTCAGATAACTCTACGGCTAAAGTAT GGAGTGCTGGGTTCTTGTCGTTTGCATTGTGGGATGCTCGCACAAGGGAGTTGCTGAAAATGTTTAATATAGATGGTCAGATTGAAAGACTGGACATGTT GTCAGGACAGGACCTTGTCATTGAAGATGAGATCAAGATGAAAATTGTTTCTGGTTCAAAGAAAGAGAAAATGCAACCTTCATTTGGTTTCTTTCAGCGT TCACGCAATGCTATAATGGGAGCAGCTGATGCTGTTCGTCGAGTTGCTTCTAAAGGTGGCTTTGGAGATGATAATAGGAGAACTGAAGCGCTGATAATAA CAAGAGATGGAATGATTTGGACTGGGTGTGCAAACGGCTCACTTGTGCAATGGGATGGAAATGGCAATCGTTTGCAAGATTTCCATTATCATTCTGTGGC TGTTCAGTGCTTGTGTACATTTGGTTTGCGAATATGGGTTGGTTATGCAAGTGGTACTGTTCAGGTATTAGACCTTGAGGGCAATCTGCTTGGAGGATGG GTGGCACACAGCAGTCCAGTTATAAAATTGGCTGTTGGAGCCGGCTATGTTTTCACCCTGGCTAATCATGGCGGTATACGCGGATGGAATGTCATGTCTC CAGGACCCCTTGACAATATATTGCGATCAGAGTTAGCTGGAAAAGAATTTTTGTATACAAGGATAGAGAATTTAAAAATATTGACTGGTACATGGAATGT AGCACAAGGAAAAGCTTCACAAGACTCACTTGTGTCCTGGTTAGGTTCTGCTGCTGGGGATGCTGGCATTGTTGTTGTTGGGTTGCAAGAAGTTGAAATG GGTGCTGGTGTGCTTGCAATGTCTGCGGCAAAGGAAACTGTTGGACTGGAGGGCAGTTCTGTCGGGCAGTGGTGGCTAGACATGGTTGGCAAAACATTGG ATGAAGGGTCAACGTTTGAACGTGTTGGTTCAAGGCAGCTAGCAGGCTTGCTGATTGCCATGTGGGTTAGAAATAGTCTTAAAGCTCATGTGGGGGATGT TGATGCTGCCGCAGTTCCATGTGGCTTTGGACGTGCAATTGGTAATAAGGGTGCTGTTGGTTTGAGGATTAGGGTATATGATCGGGTAATGTGCTTTGTT AATTGCCACTTTGCAGCACATTTAGAAGCGGTTAATCGTCGGAATGCTGATTTTGACCATGTATATCGGACTATGACCTTTGGCCGACCATCTAATTTCT TCGGTGCTGCAGCTGGTATGGTGTCATACCTGTTCTTGTCTTGCTCGATTGCCTGCTATTTAATTTGGCTTGTTTATAGAACTGGCTTGCCATTACTCCT TTCTATTGCAGCTGGCACTTCATCTGCAGCCCAAATGCTTCGCGGTGCAAATGTTATGGGTGCTAACTACTCTCCAGAAGGAATACCCGAGTTATCAGAG GCAGACATGGTTATATTTCTTGGTGATTTTAATTATCGGCTTGATGGTATATCTTATGATGAAGCAAGGGATTTTGTATCTCAGAGATGCTTTGATTGGC TTAGAGAAAAGGACCAGCTCCGCACAGAAATGGGAGCTGGAAATGTGTTCCAAGGAATGCGTGAAGCAGTTATTAGATTTCCTCCCACATACAAGTTTGA AAAGCACCAACCTGGTTTAGCAGGGTATGATTCAGGTGAAAAGAAGCGCGTCCCTGCCTGGTGTGACAGAGTGCTATATCGTGATAGCCGGTCAGCTCAT GTATCTGAATGCAGCTTAGACTGTCCTGTTGTCTCTTCGATATCACAGTATGATGCCTGCATGGATGTGACCGACAGTGATCACAAGCCTGTTCGTTGCA TATTCAGTATTGATATTGCAAAAGTTGACGAGTCAGTGAGGAGACAAGAGTTTGGAGACATTATGAAATCAAATGAGGAAATTAGATACATAATTGATGA ACTATGCAAGATTCCAGAAACCATTGTAAGCACGAACAACATAATCCTTCAAAACCAGGATACAACCATCTTGCGTATCACAAATAAATGCGGGGAAAAT TATGCTTTGTTCGAAATTATTTGTGAAGGCCAGTCAATAATTGATGAAGATGGACAAGCATCAGATCATCATCCAAGAGGTTCCTATGGCTTTCCCCAAT GGCTTGAGGTCACTCCAGCTGCTGGCATAATCAAACCAGACCATATTGCCGAGGTGTCGATTCATCTTGAAGATTTCCCCACCGTGGAGGTTTTTGTTGA TGGTGCCCCTCAGAATTCATGGTGTGAAGACACCAGGGACAAGGAAGCTATGTTGGTGGTGAAAGTTCAAGCTAGTTACAACACAAATGAGACCAAAAAT CATCGGATTCGTGTGCGTCACTGCTGTTCATCGCAAACAGCACAACTTGGCACAAGACCAAATGGCTCGGGGCAAATCCAAGGAAATCTTCTCCGCCGGG CTGATTACCAACATCTTAGCAGTTCCTATGACATGGTTAATCACCTGCGCAATTTGCACAGTCCATAA
AA sequence Show only first row Show all	>Potri.010G177400.8 pacid=42799274 polypeptide=Potri.010G177400.8.p locus=Potri.010G177400 ID=Potri.010G177400.8.v4.1 annot-version=v4.1 MDPNDDVFFSVHSPSSQINNNDDSSSSSPPVRTPKIFDRYISSSISSPSSSDYEDDLQPSNSISSLEASTKRLDYMIQFLDRKLSNNTTTNTSNNDSVSH THKTLGLPEFIGKGGGAGIFRVPVRAAVHPDRPPSLEIRPHPLRESQIGRVLRTIVTTENQLWGGRENGAVQVWELKEMYGGSDETAPCEESVALTSGSG VTCLIGDEGSRVVWSGHIDGRIRCWKMDPGPDSDSSRVREVLSWAAHRGPVMSMIMTCYGDLWSGSEGGVIKIWPWEALEKAFSFTAEERHMAALLVERS FIDPRNQVTANGLSNVLNSDVKHLLSDNSTAKVWSAGFLSFALWDARTRELLKMFNIDGQIERLDMLSGQDLVIEDEIKMKIVSGSKKEKMQPSFGFFQR SRNAIMGAADAVRRVASKGGFGDDNRRTEALIITRDGMIWTGCANGSLVQWDGNGNRLQDFHYHSVAVQCLCTFGLRIWVGYASGTVQVLDLEGNLLGGW VAHSSPVIKLAVGAGYVFTLANHGGIRGWNVMSPGPLDNILRSELAGKEFLYTRIENLKILTGTWNVAQGKASQDSLVSWLGSAAGDAGIVVVGLQEVEM GAGVLAMSAAKETVGLEGSSVGQWWLDMVGKTLDEGSTFERVGSRQLAGLLIAMWVRNSLKAHVGDVDAAAVPCGFGRAIGNKGAVGLRIRVYDRVMCFV NCHFAAHLEAVNRRNADFDHVYRTMTFGRPSNFFGAAAGMVSYLFLSCSIACYLIWLVYRTGLPLLLSIAAGTSSAAQMLRGANVMGANYSPEGIPELSE ADMVIFLGDFNYRLDGISYDEARDFVSQRCFDWLREKDQLRTEMGAGNVFQGMREAVIRFPPTYKFEKHQPGLAGYDSGEKKRVPAWCDRVLYRDSRSAH VSECSLDCPVVSSISQYDACMDVTDSDHKPVRCIFSIDIAKVDESVRRQEFGDIMKSNEEIRYIIDELCKIPETIVSTNNIILQNQDTTILRITNKCGEN YALFEIICEGQSIIDEDGQASDHHPRGSYGFPQWLEVTPAAGIIKPDHIAEVSIHLEDFPTVEVFVDGAPQNSWCEDTRDKEAMLVVKVQASYNTNETKN HRIRVRHCCSSQTAQLGTRPNGSGQIQGNLLRRADYQHLSSSYDMVNHLRNLHSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.010G177400 [exp]	0	1
AT5G58160			actin binding (.1)		Potri.018G108000 [exp]	4.24	0.7952
AT1G67500		ATREV3	recovery protein 3 (.1.2)		Potri.013G022200 [exp]	5.29	0.7850
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Potri.007G070100 [exp]	5.83	0.8032
AT3G21480			BRCT domain-containing DNA rep...		Potri.010G014700 [exp]	7.74	0.7903
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	18.70	0.7706
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G063000 [exp]	21.81	0.7522	NPH4.1
AT2G46920		POL	poltergeist, Protein phosphata...		Potri.014G110500 [exp]	24.26	0.7235	Pt-POL.1
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	27.11	0.7219
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	31.28	0.7325
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G215700 [exp]	34.05	0.6793

Compare expression of checked genes

Potri.010G177400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.