Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65560 515 / 0 Zinc-binding dehydrogenase family protein (.1) AT3G03080 432 / 2e-152 Zinc-binding dehydrogenase family protein (.1) AT5G16970 427 / 1e-150 AT-AER alkenal reductase (.1) AT5G16990 427 / 2e-150 Zinc-binding dehydrogenase family protein (.1) AT1G26320 426 / 7e-150 Zinc-binding dehydrogenase family protein (.1.2) AT5G17000 424 / 5e-149 Zinc-binding dehydrogenase family protein (.1) AT5G16960 397 / 1e-138 Zinc-binding dehydrogenase family protein (.1) AT5G37980 397 / 2e-138 Zinc-binding dehydrogenase family protein (.1) AT3G59845 396 / 2e-138 Zinc-binding dehydrogenase family protein (.1.2) AT5G38000 393 / 8e-137 Zinc-binding dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G002300 [exp] 452 / 2e-160 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 446 / 7e-158 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G142400 [exp] 427 / 2e-150 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.007G143600 [exp] 423 / 6e-149 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.007G143800 [exp] 422 / 1e-148 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 406 / 4e-142 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G005700 [exp] 406 / 2e-141 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002950 [exp] 402 / 1e-140 AT5G16970 464 / 7e-165 alkenal reductase (.1) Potri.017G006000 [exp] 400 / 2e-139 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040589 [exp] 466 / 4e-164 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 432 / 3e-152 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 419 / 3e-147 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 419 / 4e-147 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 416 / 7e-146 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 407 / 2e-142 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 405 / 1e-141 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 402 / 3e-140 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 400 / 1e-139 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10030087 [exp] 332 / 5e-113 AT5G16990 336 / 1e-114 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF16884 [poplar] [flax] ADH_N_2 N-terminal domain of oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.010G177700.1 pacid=42799793 polypeptide=Potri.010G177700.1.p locus=Potri.010G177700 ID=Potri.010G177700.1.v4.1 annot-version=v4.1 ATGAAAATGGAAGCGGAAACAGTGGATAACAAGCAGGTAATATTCAAGGGGTTTATAGACAGAATACCGAGAGAGACAGACATGGAACTAAAGATTGGAA AAATAGAGCTCAAAGCACCAAAAGGGTCCGGAGCTTTTTTAGTCAAGAATCTCTATTTGTCTTGTGACCCTTACATGAGAGGTCGCATGCGTGAGTATTA TGATTCATACATCCCTCCTTTTGTCCCTGGCCAGGCGATACAAGGATTTGGTGTATCAAAGGTTGTGGATTCTGATGATCCAGATTTCAAGCCTGGAGAC TTAGTTTCAGGGCTGACTGGTTGGGAAGAATTCAGCTTGATGCGGAAACATGAGCAATTGAGAAGAATCCAGCAAGATGATATCCCCCTCTCATATCACG TGGGTCTTCTTGGTATGGCAGGTTTTACTGCTTATGCAGGGTTCTATGAGGTCTGCTCCCCTGAAATAGGGGAGAATGTCTTTGTCTCTGCCGCTTCCGG TGCAGTTGGCCAGCTTGTTGGCCAGCTTGCCAAGTTACATGGCTGCTATGTAGTTGGAAGTGCTGGCACAAGCCAAAAGGTTGACATTTTAAAGAACAAG CTTGGATTCGATCAGGCTTTTAACTACAAAGAGGAACCCGACCTGAATGCAGCTTTGAAAAGGTACTTCCCTGAAGGCATTGATATCTACTTTGATAATG TTGGTGGAGATATGCTTGAAGCAGCATTGCTCAACATGAGGATTCATGGCCGAATTGCAGTGTGTGGAATGGTTTCTTCCAACAGCCTCTCTGTTTCCAA AGGGATTCACAACTTGTTCAGTCTCATAGCCAAACGCATTAGGATGCAAGGATTCCTGCAAAGTGATTACTTGCATTTATATCCACGCTTCTTTGAAAAT GTTGTCAGTAACTACAAACAAGGGAAGATTGTTTACATTGAAGACATGAGTGAAGGATTGGAAAGTGCTCCAGCTGCTTTAGTTGGATTGTTTTCTGGAA AAAACGTTGGTAAGCAGGTCATCTGTGTAGCCCGTGAATGA
AA sequence Show only first row Show all	>Potri.010G177700.1 pacid=42799793 polypeptide=Potri.010G177700.1.p locus=Potri.010G177700 ID=Potri.010G177700.1.v4.1 annot-version=v4.1 MKMEAETVDNKQVIFKGFIDRIPRETDMELKIGKIELKAPKGSGAFLVKNLYLSCDPYMRGRMREYYDSYIPPFVPGQAIQGFGVSKVVDSDDPDFKPGD LVSGLTGWEEFSLMRKHEQLRRIQQDDIPLSYHVGLLGMAGFTAYAGFYEVCSPEIGENVFVSAASGAVGQLVGQLAKLHGCYVVGSAGTSQKVDILKNK LGFDQAFNYKEEPDLNAALKRYFPEGIDIYFDNVGGDMLEAALLNMRIHGRIAVCGMVSSNSLSVSKGIHNLFSLIAKRIRMQGFLQSDYLHLYPRFFEN VVSNYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVICVARE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	0	1
					Potri.017G119700 [exp]	1.41	0.8717
AT5G66450			Phosphatidic acid phosphatase ...		Potri.007G021600 [exp]	2.82	0.8835
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	3.46	0.8622
AT5G11910			alpha/beta-Hydrolases superfam...		Potri.006G227900 [exp]	4.35	0.8085
AT2G17695			unknown protein		Potri.005G105500 [exp]	6.63	0.8531
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.007G131700 [exp]	7.74	0.8446
AT1G28100			unknown protein		Potri.003G163800 [exp]	10.00	0.8284
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	11.83	0.8076
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.007G022700 [exp]	12.24	0.8111
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143600 [exp]	13.41	0.8387

Compare expression of checked genes

Potri.010G177700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.