Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 731 / 0 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 506 / 3e-173 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 469 / 3e-159 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 468 / 1e-158 Leucine-rich repeat protein kinase family protein (.1) AT4G39400 327 / 6e-99 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 324 / 1e-97 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 301 / 1e-89 BRL3 BRI1-like 3 (.1) AT1G55610 297 / 3e-88 BRL1 BRI1 like (.1.2) AT5G16000 279 / 3e-85 NIK1 NSP-interacting kinase 1 (.1) AT2G01950 288 / 5e-85 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G178050 [exp] 1148 / 0 AT5G48380 710 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 1071 / 0 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 825 / 0 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 583 / 0 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 550 / 0 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G074400 [exp] 521 / 4e-179 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 520 / 4e-179 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G081700 [exp] 496 / 2e-169 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 495 / 3e-169 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008743 [exp] 775 / 0 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 757 / 0 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 478 / 4e-162 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 333 / 4e-101 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 331 / 3e-100 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 315 / 2e-94 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 308 / 7e-92 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10036672 [exp] 291 / 4e-90 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 288 / 4e-89 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030898 [exp] 281 / 7e-86 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G177900.1 pacid=42798542 polypeptide=Potri.010G177900.1.p locus=Potri.010G177900 ID=Potri.010G177900.1.v4.1 annot-version=v4.1 ATGGCACTGAGCGAGAAAAATCCTATGGTTGTTGCCCATATTTTGATTGGGATGGTTTTGGTTTTGCTGAGTAGTAGAATATCTGTGAGTAATGCTACTG AGACTGATTTAGCGTGCTTGAAATCCATCAAAGCTTCTCTGGTGGACCCTAATAACTACTTGAACACTACATGGAATTTCGACAACAATACTGAAGGCTT CATATGTAGATTTATGGGCATTGATTGCTGGCACCCTGACGAGAACAGAGTTCTAAATATCCGCCTTTCAGACTTGGGTCTTGAGGGCCAGTTCCCCCCT GGAATCCAGAATTGCACAAGCTTGACTGGCTTGAATCTTTCGCAGAACCAGCTATCTGGCTCAATCCCTGCTAATATAGCAAAGTTTATCCCCTATATTA CAAACCTTGATCTTTCATTCAACAATTTTTCGGGTGAAATTCCACAAAATCTTGCAAATTGTAGTTTCTTGAATGATCTCAAACTTGACAACAACCGGCT AACAAGCAAGATTCCGCCGGAATTTGGCCTGCTTGATCGGATCAAGGTATTTACGGTTACCAACAATCTTCTATCAGGGCCGATCCCCTCATTTATCCAT AATAACATCCCAGCTGATAGCTTTGCAAATAATCTGGACCTCTGTGGGAAGCCATTGAATTCCTCCTGTCCAGGTGTCGCAAGGAAATCCCATGTTGGAG TATTTGCTGCATCAGCCGCTGGCGGGATAACATTTACATCAATTATTGTTGGTGTCTTTCTGTTCTTGTCTCGCGGAGCGGCTAAGAAGAAGGCGGAGGA TCCTGAAGGTAACAGATGGGCAAAGAGCATCAAGGGAACCAAAGGCATCAAGGTTTCCATGTTTGAGAAATCGGTTTCAAAAATGAGATTGAGTGATCTC ATGAAGGCAACCAACGACTTCAGTAATAACAACATCATTGGAGCAGGAAGAACAGGACCGATGTACAAGGCAGTGATTTCTGATGGTTGTTTCCTTATGG TTAAGAGATTGCAAGGCTCTCAGCGTTTAGAGAAAGAGTTTGTATCAGAGATGAAGACACTTGGGAATGTGAAACACCGAAATTTGGTCCCGCTGCTGGG CTTTTGTGTGGCAAAGAGGGAGAGATTTTTGGTGTATAAATTCATGGAAAATGGGACCCTTTATGATAAACTGCACCCAGTGGAACCTGAGATCAGGAAC ATGGATTGGTCCCTGAGGCTCAAAATTGCAATTGGAGCGGCTAGAGGTTTGGCATGGCTTCATTATGACTGCAATCCACGAATTATCCACAGGAACATAA GCTCCAAATGCATACTCTTGGATAACGATTTTGAGCCAAAGTTATCTGATTTTGGCCTTGCCAGACTCATGAACCGAATCGACACACATTTGAGAGCTTT TGTCAATGGGGAGTTTGGGGGGTTGGATTATGTTGCTCCTGAATATCTAAGGACCCTTGTTGCAACGCCCAAGGGGGATGTTTATAGCTTTGGTGTGGTT CTCCTGGAGTTGATCACTGGTGAAAAGCCCACTCATGTTGCTAATGCCCCTGAAAGCTTCAAGGGAAGTTTAGTGGAGTGGATCAGACAACTGACAGATG GTCCGCTTCTTCATACTTCCATTGACAAGCCTTTGCTTGGAAATGGATTCGATCACGAACTCAACCAGTTTCTTAAAGTTGCTTGTAACTGTGTGGTTGA GAATGCCAAGGAGAGACCAACAATGTTTGAGGTGCATCAGCTCCTCAGAGCTATTGGGGAGAGATACCATTTCACAACTGAAGATGATATTATGTTGCCA ACTGATACAGGTGACACTGATTTCCCGGATGAACTTATTGTTGCCGATGCAACAAAGGAAGTTTAA
AA sequence Show only first row Show all	>Potri.010G177900.1 pacid=42798542 polypeptide=Potri.010G177900.1.p locus=Potri.010G177900 ID=Potri.010G177900.1.v4.1 annot-version=v4.1 MALSEKNPMVVAHILIGMVLVLLSSRISVSNATETDLACLKSIKASLVDPNNYLNTTWNFDNNTEGFICRFMGIDCWHPDENRVLNIRLSDLGLEGQFPP GIQNCTSLTGLNLSQNQLSGSIPANIAKFIPYITNLDLSFNNFSGEIPQNLANCSFLNDLKLDNNRLTSKIPPEFGLLDRIKVFTVTNNLLSGPIPSFIH NNIPADSFANNLDLCGKPLNSSCPGVARKSHVGVFAASAAGGITFTSIIVGVFLFLSRGAAKKKAEDPEGNRWAKSIKGTKGIKVSMFEKSVSKMRLSDL MKATNDFSNNNIIGAGRTGPMYKAVISDGCFLMVKRLQGSQRLEKEFVSEMKTLGNVKHRNLVPLLGFCVAKRERFLVYKFMENGTLYDKLHPVEPEIRN MDWSLRLKIAIGAARGLAWLHYDCNPRIIHRNISSKCILLDNDFEPKLSDFGLARLMNRIDTHLRAFVNGEFGGLDYVAPEYLRTLVATPKGDVYSFGVV LLELITGEKPTHVANAPESFKGSLVEWIRQLTDGPLLHTSIDKPLLGNGFDHELNQFLKVACNCVVENAKERPTMFEVHQLLRAIGERYHFTTEDDIMLP TDTGDTDFPDELIVADATKEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G177900 [exp]	0	1
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Potri.011G071400 [exp]	2.00	0.8489
AT1G16670			Protein kinase superfamily pro...		Potri.011G112000 [exp]	2.64	0.8665
AT2G33580			Protein kinase superfamily pro...		Potri.005G259600 [exp]	6.00	0.8175
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.001G310700 [exp]	7.68	0.7826
AT3G29400		ATEXO70E1	exocyst subunit exo70 family p...		Potri.017G093966 [exp]	11.83	0.8397
AT5G59550			zinc finger (C3HC4-type RING f...		Potri.006G087800 [exp]	14.89	0.7956
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	16.24	0.8465
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	16.73	0.8419
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028500 [exp]	18.89	0.8151
AT1G77810			Galactosyltransferase family p...		Potri.005G171400 [exp]	22.40	0.7224

Compare expression of checked genes

Potri.010G177900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.