Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48380 710 / 0 BIR1 BAK1-interacting receptor-like kinase 1 (.1) AT3G28450 481 / 2e-163 Leucine-rich repeat protein kinase family protein (.1) AT1G27190 460 / 2e-155 Leucine-rich repeat protein kinase family protein (.1) AT1G69990 456 / 4e-154 Leucine-rich repeat protein kinase family protein (.1) AT4G39400 327 / 5e-99 DWF2, CBB2, BIN1, BRI1, ATBRI1 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 323 / 1e-97 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G13380 320 / 1e-96 BRL3 BRI1-like 3 (.1) AT1G55610 315 / 9e-95 BRL1 BRI1 like (.1.2) AT2G01950 292 / 2e-86 VH1, BRL2 VASCULAR HIGHWAY 1, BRI1-like 2 (.1) AT2G02220 286 / 9e-85 ATPSKR1 phytosulfokin receptor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G177900 [exp] 1112 / 0 AT5G48380 731 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.008G078900 [exp] 1066 / 0 AT5G48380 734 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.002G240000 [exp] 805 / 0 AT5G48380 721 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G003800 [exp] 549 / 0 AT5G48380 455 / 1e-153 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G004216 [exp] 536 / 0 AT5G48380 412 / 2e-136 BAK1-interacting receptor-like kinase 1 (.1) Potri.017G074400 [exp] 508 / 3e-174 AT3G28450 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G349900 [exp] 505 / 3e-173 AT3G28450 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G138600 [exp] 482 / 8e-164 AT1G27190 712 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G081700 [exp] 480 / 4e-163 AT1G27190 747 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008743 [exp] 754 / 0 AT5G48380 764 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10002147 [exp] 745 / 0 AT5G48380 755 / 0.0 BAK1-interacting receptor-like kinase 1 (.1) Lus10030811 [exp] 481 / 2e-163 AT1G27190 772 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033533 [exp] 340 / 2e-103 AT4G39400 1492 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10020835 [exp] 336 / 3e-102 AT4G39400 1486 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10005784 [exp] 322 / 4e-97 AT4G39400 1361 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10006817 [exp] 318 / 2e-95 AT4G39400 1356 / 0.0 DWARF 2, CABBAGE 2, BRASSINOSTEROID INSENSITIVE 1, BR INSENSITIVE 1, Leucine-rich receptor-like protein kinase family protein (.1) Lus10038875 [exp] 303 / 8e-90 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10014996 [exp] 300 / 6e-89 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033104 [exp] 288 / 7e-89 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G178050.1 pacid=42797212 polypeptide=Potri.010G178050.1.p locus=Potri.010G178050 ID=Potri.010G178050.1.v4.1 annot-version=v4.1 ATGGCATTGAGCGAGAAAAATCCTATGGTTGTTGCCCATATTTTGATTGGGATGGTTTTGGTTTTGCTGAGTAGTAGAATATCTGTGAGTAATGCTACTG AGACTGATTTAGCGTGCTTGAAATCCATCAAAGCTTCTCTGGTGGACCCTAATAACTACTTGAACACTACATGGAATTTCAACAACAATACTGAAGGCTT CATATGTAGATTTATGGGCATTGATTGCTGGCACCCTGACGAGAACAGAGTTCTAAATATCCGCCTTTCAGACTTGGGTCTTGAGGGCCAGTTCCCCCTT GGAATCAAGAATTGCACAAGCTTGACTGGCTTGGATCTTTCGCACAACAAGCTATCTGGCTCAATCCCTGATAATATCTCAGATCTTATCCACTATATTA CAAACCTTGATCTTTCATTCAACAATTTTTCGGGTGGAATTCCAAAAAATCTTGCAAATTGTAGTTTCTTGAATGATCTCAAACTTGACAACAACCGGCT AACAGGCAAGATTCCGCTGGAACTTGGCCTTCTTGATCGGATCAAGGAATTTACGGTTACCAACAATCTTCTATCAGGGCAGATCCCCTCATTTGTCCAT AATAACATCCCAGCTGATAGCTTTGCAAATAATCTGGACCTCTGTGGAAAGCCATTGAGTACCTGTCCAGCTGTCGCGAGGAAATCCCATGTTGGAGTAA TTGCTGCATCAGCCGCTGGCGGGATAACATTTACATCAATTATTGTTGGTGTCTTTCTGTTCTACTTGTCTCGCGGAGCGGCTAAGAAGAAGGCGGAGGA TCCTGAAGGTAACAGATGGGCAAAGAGCATCAAGGGAACCAAAGGCATCAAGGTTTCCATGTTTGAGAAATCGGTTTCAAAAATGAGATTGAGTGATCTC ATGAAGGCAACCAACGACTTCAGTAATAACAACATCATTGGAGCCGGAAGAACAGGACCAATGTACAAGGCAGTGATTTCTGATGGTTGCTTCCTTATGG TTAAGAGATTGCAAGACTCTCAGCGTTTAGAGAAAGAGTTTGTATCAGAGATGAAGACACTTGGGAATGTGAAACACCGTAATTTGGTCCCGCTGCTGGG CTTTTGTGTAGCAAAGAGGGAGAGATTTTTGGTGTATAAATTCATGGAAAATGGGACCCTTTATGATAAACTGCACCCAGTGGAACCTGAGATCAGGAAC ATGGATTGGTCCCTGAGGCTCAAAATTGCAATTGGAGCGGCTAGAGGTTTGGCATGGCTTCATCATAACTGCAATCCACGAATTATCCACAGGAACATAA GCTCCAAATGCATACTCTTGGATAACGATTTTGAGCCAAAGTTATCTGATTTTGGCCTTGCCAGACTTATGAACCCAATCGACACACATTTGAGCACTTT CGTCAATGGGGAGTTTGGGGACATGGGTTATGTTGCTCCTGAATATCTACGGACACTTGTTGCAACGCCCAAGGGGGATGTTTATAGCTTTGGTGTGGTT CTCCTGGAGTTGATCACTGGTGAAAAGCCCACTCATGTTGCTAATGCCCCTGAAAGCTTCAAGGGAAGTTTAGTGGAGTGGATCAGACAACTGACAGATG GTCCGCTTCTTCATACTTCCATTGACAAGCCTTTGCTTGGAAATGGATTCGATCACGAACTCAACCAATTTCTTAAAGTTGCTTGTAACTGTGTGGTTGA GAATGCTAAGGAGAGACCAACAATGTTTGAGGTGCATCAGCTCCTCAGAGCTATTGGGGAGAGATACCATTTCACAACTGAAGATGATATTGTGTTGCCA ACTGATACAGGTGACACTGATTTCCCGGATGAACTTATTGTTGCCGATGCAACAAAGGAAGTTTAA
AA sequence Show only first row Show all	>Potri.010G178050.1 pacid=42797212 polypeptide=Potri.010G178050.1.p locus=Potri.010G178050 ID=Potri.010G178050.1.v4.1 annot-version=v4.1 MALSEKNPMVVAHILIGMVLVLLSSRISVSNATETDLACLKSIKASLVDPNNYLNTTWNFNNNTEGFICRFMGIDCWHPDENRVLNIRLSDLGLEGQFPL GIKNCTSLTGLDLSHNKLSGSIPDNISDLIHYITNLDLSFNNFSGGIPKNLANCSFLNDLKLDNNRLTGKIPLELGLLDRIKEFTVTNNLLSGQIPSFVH NNIPADSFANNLDLCGKPLSTCPAVARKSHVGVIAASAAGGITFTSIIVGVFLFYLSRGAAKKKAEDPEGNRWAKSIKGTKGIKVSMFEKSVSKMRLSDL MKATNDFSNNNIIGAGRTGPMYKAVISDGCFLMVKRLQDSQRLEKEFVSEMKTLGNVKHRNLVPLLGFCVAKRERFLVYKFMENGTLYDKLHPVEPEIRN MDWSLRLKIAIGAARGLAWLHHNCNPRIIHRNISSKCILLDNDFEPKLSDFGLARLMNPIDTHLSTFVNGEFGDMGYVAPEYLRTLVATPKGDVYSFGVV LLELITGEKPTHVANAPESFKGSLVEWIRQLTDGPLLHTSIDKPLLGNGFDHELNQFLKVACNCVVENAKERPTMFEVHQLLRAIGERYHFTTEDDIVLP TDTGDTDFPDELIVADATKEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	0	1
					Potri.017G027900 [exp]	1.00	0.9450
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	2.00	0.9387
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G025100 [exp]	3.74	0.9184
					Potri.004G188300 [exp]	4.24	0.9300
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.012G069700 [exp]	4.58	0.9280	PtrAOH3,ATH2.3
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.014G035500 [exp]	4.58	0.9321
AT1G52190			Major facilitator superfamily ...		Potri.006G240000 [exp]	4.89	0.9278
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Potri.016G068600 [exp]	5.47	0.9302	Pt-SYP121.1
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.015G049000 [exp]	5.74	0.9256
					Potri.017G111050 [exp]	6.32	0.9152

Compare expression of checked genes

Potri.010G178050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.