Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65540 889 / 0 LETM1-like protein (.1) AT3G59820 865 / 0 LETM1-like protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078600 [exp] 1182 / 0 AT1G65540 915 / 0.0 LETM1-like protein (.1) Potri.007G142000 [exp] 890 / 0 AT3G59820 840 / 0.0 LETM1-like protein (.1.2) Potri.001G187100 [exp] 59 / 1e-08 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027069 [exp] 867 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2) Lus10025602 [exp] 867 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07766 [poplar] [flax] LETM1 LETM1-like protein
Representative CDS sequence Show only first row Show all	>Potri.010G178400.1 pacid=42799461 polypeptide=Potri.010G178400.1.p locus=Potri.010G178400 ID=Potri.010G178400.1.v4.1 annot-version=v4.1 ATGGCTTCGAGAGCAATCTTGCGGAGAAAGCGATCCCTCTTTGATTTCCTGAGGGAACCGAATTGCTTGATTCGGGGGGGGTTTTCGAGTTTCCAGTACG GGCGAGGACCGCCTCAATCAAATGACCTGCAAGAATCGAGATGCGTTATCAATCATCCGTTCGGGAGTACTGATAGTAGAAATGAAAGAGGTTTGTCATT GGTTTCCAGGGATGGGGTGTCGAAGGTTTTAGCCGCAGCAGGGTTTCTTAGGCATAACTCTTTTGGATATTCAGGTTTAGGTTGTGGAATTGGAAATGGA GATTTTGATTCTTCTTTGGGCATTAGGTGTTATTTGCAGTCTGTAAGTTATGCTTCAACAGCAACTGCTGGTCAACCTGAATATGGCCGTGGGAGTGATA GAAATGAACAACTGGATGCCAAACAGGCGAAGGAAGCTTCACCGGAGGAGTGTGATGAAGCTGTTGAAGATTTGACCGAGGTAAAAGCCAAGGCTAAGGC TAAGCAGGCTCATGAATCCCAAAAGAGCACTAAAACAGTAATGCAGAAAGTATGGGCGAAGCTTTTGGGGATTGGCCCGGCTTTGAGAGCCGTTGCTGCT ATGAGCAGGGAAGACTGGGCTAAGAAGATTCGTTATTGGAAGGATGAATTGAAGTCTACCATGCAACACTATTGGTTGGGTACTAAACTACTCTGGGCTG ATGTCAGGATTAGCTCGAGGTTATTGGTGAAACTTGCCAGTGGGAAGGGCCTTTCTAGAAGGGAAAGGCAACAACTAACACGTACTACTGCTGACATATT TAGGCTGGTTCCTTTTGCTGTTTTCATCATAGTTCCATTCATGGAGTTTTTGCTGCCAGTATTCCTAAAACTATTTCCCAACATGTTGCCATCAACCTTC CAGGACAAGATGAAGGAACAGGAGGCATTGAAAAGAAAGCTAAATGCAAGAATTGAATACGCTAAGTTTCTTCAAGACACCGTGAAAGAAATGGCAAAAG AAGTCCAGAACTCTCGAAGTGGAGAAGCAAAGCAGACAGCAGGAGATCTGGATGAGTTTATGAACAAGGTTAGGACTGGTTCTCGTGTTTCCAATGAAGA AATTTTAGGCTTTGCCAAGTTATTCAATGATGAGCTTACTTTGGATAACATTAGCAGGCCTCGTTTAGTAAGCATGTGCAAGTATATGGGTATCAGCCCA TATGGAACAGATGCATATCTACGTTATATGCTTCGGAGAAGACTGCAAGAGATCAAGAATGATGATAAGATGATTCAAGCTGAGGGTGTGGAGTCCCTTT CTGAAGCTGAACTTCGTCAAGCATGTAGAGACCGGGGCTTACTTGGATTGCTTTCTGTGGATGAAATGCGGCAACAGTTGCGTGACTGGCTGGATTTATC TCTCAATCACTCTGTTCCATCCTCTTTGTTGATATTGTCTAGAGCTTTCTCTGTTTCTGGAAAAGTTAGGCCTGAGGAAGCTGTTCAGGCTACACTGTCA TCTCTTCCGGACGAGGTTGTGGATACTGTTGGAGTTACAGCCTTGCCATCTGAAGATTTAGTTTCAGAAAGGAGAAGAAAGTTGGAGTTCCTAGAAATGC AAGAAGAACTGATCAAGGAGGAGGAGGAGGAGGAGGAAGAAGAGCAGGCTAGGATGAAGGAATCTGTTAGTAGTCAAAAGGACGTGGCTTTGGAAGAGAT GACTATTCCAACAGCTGGAGAAGCACAAGAACAGGCGAAAGCAAAAACATTGGAGAAACATGAGCAGCTTTGTGAGCTTAGTCGTGCATTGGCTGTTTTA GCTTCTGCATCTTCTGTAAGTAGGGAGCGAGAAGAGTTCCTGCGACTTGTCAAAAAGGAGATAGACTTGTATAACAATATGGTGGACAAAGAAGGTACAG AAGGTGAGGAAGAAACTAAGAAGGCATACAAAGCTGCCAGAGAGGAGAGCGATCATGCTGCTGGAACAGATATCTCTGGCAAAGTTTCTTCAGCCCTGAT CGATAGAGTAGATGCCATGCTCCAAAAGCTGGAAAAAGAAATTGACGATGTTGATGCTAAAATTGGAGATAGATGGCGCCTGCTTGATAGGGATTATGAT GGTAAAGTGACTCCTGAGGAGGTTGCCTCTGCTGCTATGTACCTCAAGGACCACTTGGGAAAGGAGGGCATCCAAGAACTCATAAGCAATCTTTCCAAAG ATACAGAAGGAAAGATCCTTGTGGAAGATATTGTCAGACTAGGCAGTGAAATGGAAGATGCTGATGAAGTGGAGAAAGGAAAATCATAG
AA sequence Show only first row Show all	>Potri.010G178400.1 pacid=42799461 polypeptide=Potri.010G178400.1.p locus=Potri.010G178400 ID=Potri.010G178400.1.v4.1 annot-version=v4.1 MASRAILRRKRSLFDFLREPNCLIRGGFSSFQYGRGPPQSNDLQESRCVINHPFGSTDSRNERGLSLVSRDGVSKVLAAAGFLRHNSFGYSGLGCGIGNG DFDSSLGIRCYLQSVSYASTATAGQPEYGRGSDRNEQLDAKQAKEASPEECDEAVEDLTEVKAKAKAKQAHESQKSTKTVMQKVWAKLLGIGPALRAVAA MSREDWAKKIRYWKDELKSTMQHYWLGTKLLWADVRISSRLLVKLASGKGLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTF QDKMKEQEALKRKLNARIEYAKFLQDTVKEMAKEVQNSRSGEAKQTAGDLDEFMNKVRTGSRVSNEEILGFAKLFNDELTLDNISRPRLVSMCKYMGISP YGTDAYLRYMLRRRLQEIKNDDKMIQAEGVESLSEAELRQACRDRGLLGLLSVDEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVRPEEAVQATLS SLPDEVVDTVGVTALPSEDLVSERRRKLEFLEMQEELIKEEEEEEEEEQARMKESVSSQKDVALEEMTIPTAGEAQEQAKAKTLEKHEQLCELSRALAVL ASASSVSREREEFLRLVKKEIDLYNNMVDKEGTEGEEETKKAYKAAREESDHAAGTDISGKVSSALIDRVDAMLQKLEKEIDDVDAKIGDRWRLLDRDYD GKVTPEEVASAAMYLKDHLGKEGIQELISNLSKDTEGKILVEDIVRLGSEMEDADEVEKGKS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65540			LETM1-like protein (.1)		Potri.010G178400 [exp]	0	1
AT1G45160			Protein kinase superfamily pro...		Potri.002G263000 [exp]	3.16	0.8788
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	6.00	0.8678
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	6.48	0.8660
AT5G45190			Cyclin family protein (.1.2)		Potri.007G067100 [exp]	10.19	0.8623
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	13.78	0.8591
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	16.30	0.8356
AT5G13660			unknown protein		Potri.006G082800 [exp]	16.70	0.8494
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	18.11	0.8519
AT2G44280			Major facilitator superfamily ...		Potri.009G024600 [exp]	18.97	0.8169
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.004G069200 [exp]	19.44	0.7738

Compare expression of checked genes

Potri.010G178400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.