Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16270 417 / 2e-127 SYN4, ATRAD21.3 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) AT3G59550 153 / 4e-38 ATSYN3, SYN3, ATRAD21.2 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) AT5G40840 128 / 6e-30 SYN2, ATRAD21.1 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) AT5G05490 104 / 1e-22 SYN1 BP5, SYN1 BP2, SYN1., DIF1, ATREC8 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2) AT4G05360 47 / 8e-05 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078500 [exp] 1865 / 0 AT5G16270 407 / 2e-123 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Potri.001G225600 [exp] 172 / 8e-44 AT3G59550 402 / 5e-130 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Potri.017G067400 [exp] 142 / 4e-34 AT5G40840 218 / 6e-60 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Potri.008G072300 [exp] 59 / 2e-08 AT5G05490 428 / 1e-142 SYNAPTIC 1, DETERMINATE, INFERTILE 1, Rad21/Rec8-like family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026862 [exp] 904 / 0 AT5G16270 382 / 3e-114 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020235 [exp] 861 / 0 AT5G16270 371 / 4e-110 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10020233 [exp] 618 / 0 AT5G16270 308 / 7e-91 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10023028 [exp] 157 / 6e-39 AT5G16270 327 / 2e-101 ARABIDOPSIS HOMOLOG OF RAD21 3, sister chromatid cohesion 1 protein 4 (.1) Lus10037478 [exp] 156 / 8e-39 AT3G59550 315 / 4e-97 SISTER CHROMATID COHESION 1 PROTEIN 3, Rad21/Rec8-like family protein (.1) Lus10022338 [exp] 120 / 2e-27 AT5G40840 179 / 1e-46 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3) Lus10041587 [exp] 118 / 1e-26 AT5G40840 181 / 2e-47 Sister chromatid cohesion 1 \(SCC1\) protein homolog 2, Rad21/Rec8-like family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0157 [poplar] [flax] Kleisin PF04824 [poplar] [flax] Rad21_Rec8 Conserved region of Rad21 / Rec8 like protein CL0157 [poplar] [flax] PF04825 [poplar] [flax] Rad21_Rec8_N N terminus of Rad21 / Rec8 like protein
Representative CDS sequence Show only first row Show all	>Potri.010G178600.2 pacid=42797416 polypeptide=Potri.010G178600.2.p locus=Potri.010G178600 ID=Potri.010G178600.2.v4.1 annot-version=v4.1 ATGTTTTATTCACAGTTTATATTGGCCAAGAAAGGGCCTTTAGGTACAATTTGGATAGCTGCTCATTTGGAGAGGAAGCTTCGGAAGAACCAGGTTGCTG ATACCGATATTGGTGTCTCTGTAGATTCAATTCTTTTTCCTGAAGTACCAATTGCGCTGAGATTGTCTAGTCATCTTCTGCTTGGTGTGGTGAGGATATA TTCAAGAAAGGTGAATTACCTTTTTGATGATTGCAGTGAAGCTTTGCTGAAGGTAAAGCAGGCTTTCCGCTCCACTGCAGTTGATCTACCACCAGAGGAA TCGACTGCCCCATATCACTCCATCACCTTGCCAGAGACTTTTGACCTTGATGATTTTGAGCTTCCAGACAATGATTTTTTTCAGGGCAACTATGTCGATC ATCACATTAGTACAAGGGAGCAAATTACCCTTCAAGACACAATGGATGGTGTCGTGTACTCCACATCACAATTTGGGTTGGATGAGCGGTTTGGTGATGG TGACACTTCTCATGTTGGTTTGGACATTGAAGAGGACCTGTTCCTAGCCAAGGCTGCAACTCCAAGGCCTGATGAAGTTTTAGAGCTGAACCTTCAGACA GCTGTCGAACCAGCAGATCGAAAAGTGGAGGAAGATCATGACATGATTGGAGGTGCAGAAGCCATGCCAGTGAATGGTATTAGAAACAAGATGGTAAGTC AAGCTTCAAATTCAGAATCTCTTGACTATGCTCAGGCTCCTTCCACTCCTGGTTTAATAGAAGAGCCAAACTTGTCCAGTGTTCAGGATGGTCTGGCCTG TGATGATCATTTGGAATCAGAAGATCACAATTTAACTGAAGTAGTAGGAATAGAGAGCACAGGCAATGCTTCCAGTAAGCCAGATCTTCATCAGAGGGAT GGCACAATGAATTTGTCTCCGGGCAATCATTTAAACTACGATACTGTTGTGTGCATGCCTGCCGAGGAGAATGGCTGCCTTTCTGGTGATCTGGAAATCA ATCAAGCAAAGTCACAAGGAGAGTTGCAATCCACTGCTTTGGCAGATGGGACCATTTGTGCGTTGGATGGATCAGACAAGTTAGAAGTGATAAATAATGT TGTTTGCAAGTGCAGCGAATCCACAGGAGTTAGGTTATATGAACCAGATAATTTTGAAATTACTTATGCTGTGGAAGACTTGAGCTCACTTGGAAAAACT GTAGATGCAAGTTCTGGCTGTCCATTGGAATTGGCTGGTGCCCCAGAGGATGTTGCTCAGGCTTGCGAAGGACCAGAGGATCCTGATACTTTGAACAAAA ATGTTGATAATGAAAAGATACACACTTCCATGGGTATGCTCCGGGCATGCAATTCCCATTTGAATGAGCCCGATTCATCATCTCATGGGATTAATAATGA TGAGCTCCCCCCTGAGCCACAAGATGTGCCAAGCAGGGAGGAAGCGCTCCATGGTTCTGGAATTTCCACTAAGGTGCAAGGTGAAGAATGCCATGCGACT GATGGTACACAATCAGTGGAGAATCAGATATCAGAGCTCAATTTACATGGAGAAATTCAAGTAGGAGGGAAACAAGATGAACAACCAGACAATGCATTCT ATAGTGATAATCAGTTGGAGAACTTGAATGGTTCCTTGACCGCCGAATTGCCTACACCTGAAAAGTTGCTTTCTGTACCACAAGAACTTCTTGATAAGCC AAATGATTTGCTGGTCGAGTCAACACCAGACAAAGAAATGGTAGATGGGGGTGACAGAAGCAGTGCTGGAACCAACATTACTGGAAAAAAGCGCAGTTTT ACAGAAAATTCACTAACTGTGCAAAGTTTAAATTCAATTGATTCTTTTGGAGTCTCCAGATCAAAGAGAACTGTAGATTCCATTCCTGATGATGATGATT TGCTATCTTCTATATTAGTTGGAAGAAGATCTTCAGTTCTGAAAATGAAGCCTACTCCACCTGCACCTGAAGTGGCATCCATGAAACGTGCCCGGTCTGT ATCTCGACCCAGTGCCATGAAGAGGAAGGTGCTCATGGATGATTCAATGGTCTTGCTTGGCGATACTATACGCCAACAATTAACTAATACTGAAGACATA CGTCGCTTACGAAAAAAAGCTCCTTGCACACGCACTGAGATTTTGACGATCCAGAGACAATCCTTAGATGAAGAAATTTTCAGTGAACCGGTATTGACTG GTATGTCGGCAGAGCTGACATGTTTGCAAAGTGAAACATTTGATTTGAGCAGAATTGATTTGGCTGAAAATGATGATAACAATACTTCTTCTGAAGTGGC GAAGGATTCTAGTAGACCAACTGTTGCTCAAGATAATGAATTGGAAGCAAGCACTGAACTTGCCAATTGCAGAAATGATGTTGATGGACAACCAGCTGAG AGTCCCATTTGGACTGAGAACCAGCAGGGTGAAGATCAACAATTGAGTTTAGATTTTGTTAATCAAGGGCAGATGAATGCTATTGCTGATGTTGCTGATT ATAGATCTGCAGAACACAAAACATTGGGGGAAATGACCGAAATGGAAATTGACAAAGAGAACACAGAAATTGCAGATGCAGCAAACCACGCTGCTGTTCT GCAATTTGAGGGATCTCACACTGAACTGATTTCTGGCGATGCTGGTAATATGCTGGATGGGTTGGCTCTCATGGATAGCACCATTGGCGAAGATGGTTCT CTTCATATGGATACTTCAATCCTGCCATCAGATATGATGGATACTGAACTGTTTGAGGAGGCTGCCTTGAGGGATGTGGGTGATGGAAAAACACTTGATG ATGGAATTTTAGATCATCATACAAAAAATGTTGTTGCAGTTGTTACTGAATTGAGGGAAGGGGGAGAGATTTTGTTGGAAGAAAGCAAAGCTGGTGCACC AGTGGAAGTTGGAGTAGATTTGCAGGCTGATGGTTTTGCACCTTCTGATGATGCAGACATGTTGCTTGCAAATATGTCTTCAAAAAATGGTGGATGCATT AACCTCGCTTCTGTAAATGTTGACCAAGCTCAAGATGATGTTGAAAATGACAAGCTAGGGGATGGTAATGAAGATGGGGTCCTAGCTGTGAGCCCAGGGC ATGCTGACAAGGACAGAGAGTTTAATCATCTATGCAGTGAAGATAAGATGAATTCTGCATTTCCCAAAGGACTTGACGGAGACTTCAAAAATGCTTCTCT AAATTTTGGAGATTATCTAGTCTTTCAAGAAGCTGATCAAGAGAGAACTGCAGATGCTGAAATAACTTCTGCCGACCATCCTGCTGATCTTCAAGATGTT GCATTTGCAAATGATACAGAATTTTTGAACGTAGATGATGATATGGGTGAAGAAGATGATGATGGCATGCCAGGTCCTGAAGATGCCCGCCTTCTTGACA ATAGTGGATGGTCTTCCCGCACCAGAGCTGTTGCCAAGTACCTTCAGACTATATTTGATAATGAAGGTGGAAATGGTAGGAAGGTCATTTCAGTGGACAG CCTTCTGGCTGGTAAAACGCGGAAGGAGGCATCAAGAATGTTCTTTGAAACTTTGGTTCTTAAAACAAGGGATTACATCCATGTAGAACAGTTGAAACCC TTTGACAGTATCAATGTAAAGCCACGAGCAAAGCTCATGAAATCAGACTTCTGA
AA sequence Show only first row Show all	>Potri.010G178600.2 pacid=42797416 polypeptide=Potri.010G178600.2.p locus=Potri.010G178600 ID=Potri.010G178600.2.v4.1 annot-version=v4.1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEVPIALRLSSHLLLGVVRIYSRKVNYLFDDCSEALLKVKQAFRSTAVDLPPEE STAPYHSITLPETFDLDDFELPDNDFFQGNYVDHHISTREQITLQDTMDGVVYSTSQFGLDERFGDGDTSHVGLDIEEDLFLAKAATPRPDEVLELNLQT AVEPADRKVEEDHDMIGGAEAMPVNGIRNKMVSQASNSESLDYAQAPSTPGLIEEPNLSSVQDGLACDDHLESEDHNLTEVVGIESTGNASSKPDLHQRD GTMNLSPGNHLNYDTVVCMPAEENGCLSGDLEINQAKSQGELQSTALADGTICALDGSDKLEVINNVVCKCSESTGVRLYEPDNFEITYAVEDLSSLGKT VDASSGCPLELAGAPEDVAQACEGPEDPDTLNKNVDNEKIHTSMGMLRACNSHLNEPDSSSHGINNDELPPEPQDVPSREEALHGSGISTKVQGEECHAT DGTQSVENQISELNLHGEIQVGGKQDEQPDNAFYSDNQLENLNGSLTAELPTPEKLLSVPQELLDKPNDLLVESTPDKEMVDGGDRSSAGTNITGKKRSF TENSLTVQSLNSIDSFGVSRSKRTVDSIPDDDDLLSSILVGRRSSVLKMKPTPPAPEVASMKRARSVSRPSAMKRKVLMDDSMVLLGDTIRQQLTNTEDI RRLRKKAPCTRTEILTIQRQSLDEEIFSEPVLTGMSAELTCLQSETFDLSRIDLAENDDNNTSSEVAKDSSRPTVAQDNELEASTELANCRNDVDGQPAE SPIWTENQQGEDQQLSLDFVNQGQMNAIADVADYRSAEHKTLGEMTEMEIDKENTEIADAANHAAVLQFEGSHTELISGDAGNMLDGLALMDSTIGEDGS LHMDTSILPSDMMDTELFEEAALRDVGDGKTLDDGILDHHTKNVVAVVTELREGGEILLEESKAGAPVEVGVDLQADGFAPSDDADMLLANMSSKNGGCI NLASVNVDQAQDDVENDKLGDGNEDGVLAVSPGHADKDREFNHLCSEDKMNSAFPKGLDGDFKNASLNFGDYLVFQEADQERTADAEITSADHPADLQDV AFANDTEFLNVDDDMGEEDDDGMPGPEDARLLDNSGWSSRTRAVAKYLQTIFDNEGGNGRKVISVDSLLAGKTRKEASRMFFETLVLKTRDYIHVEQLKP FDSINVKPRAKLMKSDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Potri.010G178600 [exp]	0	1
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Potri.009G155200 [exp]	1.41	0.9383	TTN8.2
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	2.44	0.8934
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	2.44	0.9113
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	4.47	0.9037
AT2G47070	SBP	SPL1	squamosa promoter binding prot...		Potri.002G188700 [exp]	4.69	0.8683
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.010G219600 [exp]	5.29	0.8930
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	5.47	0.9104	CPC902,TTN8.3
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	5.65	0.8912
AT1G64050			unknown protein		Potri.001G098500 [exp]	5.83	0.8599
AT1G51720			Amino acid dehydrogenase famil...		Potri.001G199600 [exp]	6.92	0.8366

Compare expression of checked genes

Potri.010G178600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.