Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36890 714 / 0 BGLU42 beta glucosidase 42 (.1.2) AT1G26560 500 / 2e-174 BGLU40 beta glucosidase 40 (.1) AT3G18080 493 / 2e-171 BGLU44 B-S glucosidase 44 (.1) AT5G54570 474 / 7e-164 BGLU41 beta glucosidase 41 (.1) AT3G18070 471 / 7e-163 BGLU43 beta glucosidase 43 (.1.2) AT2G44480 451 / 6e-155 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 450 / 8e-154 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G42260 447 / 1e-153 BGLU12 beta glucosidase 12 (.1) AT5G44640 447 / 2e-153 BGLU13 beta glucosidase 13 (.1) AT2G44450 441 / 4e-151 BGLU15 beta glucosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G409900 [exp] 499 / 6e-174 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.008G094200 [exp] 491 / 8e-171 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.004G040700 [exp] 490 / 2e-170 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 487 / 3e-169 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 486 / 6e-169 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.010G159900 [exp] 486 / 1e-168 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.003G211100 [exp] 476 / 6e-165 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.T085301 [exp] 476 / 6e-165 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.001G223800 [exp] 469 / 5e-162 AT2G44480 527 / 0.0 beta glucosidase 17 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020232 [exp] 754 / 0 AT5G36890 699 / 0.0 beta glucosidase 42 (.1.2) Lus10031234 [exp] 506 / 2e-176 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10037098 [exp] 504 / 7e-176 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10031808 [exp] 502 / 4e-175 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10036885 [exp] 497 / 3e-173 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10009644 [exp] 494 / 1e-171 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031235 [exp] 489 / 4e-170 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10004654 [exp] 481 / 5e-167 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10031251 [exp] 478 / 1e-165 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10037988 [exp] 463 / 3e-159 AT5G54570 741 / 0.0 beta glucosidase 41 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00232 [poplar] [flax] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Potri.010G178800.1 pacid=42800060 polypeptide=Potri.010G178800.1.p locus=Potri.010G178800 ID=Potri.010G178800.1.v4.1 annot-version=v4.1 ATGGCAAAGAAAGAGGAGTTCTTGAAGGAACATGAATATTTGAACGAGAAAGAAGTGTCCCGCTCTGACTTCCCTCCTGATTTTATCTTTGGAGTTGCCA CTTCTGCTTATCAGATTGAAGGAGCCAGCAACGAAGGTGGCAGGGGTCCTTCTATATGGGACGCTTTTGCGCAGTCTAAAGGAAACATACTTGATGGAAG CAATGGTGATGTAGCAGTGGATCATTATCATCGATACAAGGAAGATATTGAGATCATAGCCAAACTGGGGTTTGATGCTTATCGATTTTCCATATCATGG TCTCGAATCTTCCCCGATGGTTTGGGAACCAAAGTCAACGACGAAGGGATTGCTTTCTACAATAACGTCATTAATGCTCTTCTTGAAAAGGGTATTCAGC CATATGTAACTTTGTACCACTGGGACCTTCCCCTGCATCTTCAGGAGTCAATGGAAGGGTGGTTAAATAAAGAAGTTGTAAAATATTTTGCAATCTATGC AGATACTTGTTTTGCAAGTTTTGGTGATAGAGTTAAGCATTGGATCACACTTAATGAGCCTCTCCAAACAGCAATAAATGGTTATGACTCTGGGAGTTTT GCACCTGGAAGACATGACCAGCCATCAACAGAACCTTATTTGGCTTCACACCACCAGATCTTGGCCCATGCAGCAGCTGTTTCCATATACCGAAACAAGT ACAAGGACAAGCAAGGGGGACAAATAGGATTGGTCCTTGACTGTGAATGGGCAGAAACTGGTTCAAACAAAACAGAAGACAAAGTTGCAGCATCTAGACG CCTCGAATTTCAGCTTGGATGGTACTTGAATCCATTATATTACGGAGACTATCCAGAAGTTATGCGTGAAATACTGGGAGAACAGCTCCCAAAATTCACA GAGGAAGATAAGGAGTTGCTTAGAAACCCAATGGACTTTGTAGGTCTAAATCATTACACCTCAAGGTTCATAACTCATGCAACAGAGAGCCCTGAAGAAT CCTATTACTATAAAGCACAATTGATGGAGAGAAGAGTTGAATTTGAAGGGGGGGAGCCAATTGGTGAGAAGGCAGCATCAGAGTGGCTTTATGTTTGTCC TTGGGGACTCCGGAAGGTTCTCAATTACTTAGCTCAGAAATACAACAATCCCACAATATATGTTACAGAGAATGGTATGGATGACGAGGACATTGATGCC CCACTTCATGAAGTTCTAGATGACAATCTGAGAGTTCGCTATTTTAAAGGATACCTTGCTTCAGTTGCTCAGGCAATCAAGGATGGAGTACAAGTGAAGG GATATTTTGCATGGTCATTACTGGACAACTTTGAGTGGGCTCAAGGTTATACCAAGCGTTTCGGTTTGGTGTATGTGGATTACAAGAATGGGCTCTCTCG GCACCCAAAATCTTCTGCTTATTGGTTCATGCGGTTCTTAAAAGGTGTTGAAGGGAAAAGCGGCAAAGAAGAGTGA
AA sequence Show only first row Show all	>Potri.010G178800.1 pacid=42800060 polypeptide=Potri.010G178800.1.p locus=Potri.010G178800 ID=Potri.010G178800.1.v4.1 annot-version=v4.1 MAKKEEFLKEHEYLNEKEVSRSDFPPDFIFGVATSAYQIEGASNEGGRGPSIWDAFAQSKGNILDGSNGDVAVDHYHRYKEDIEIIAKLGFDAYRFSISW SRIFPDGLGTKVNDEGIAFYNNVINALLEKGIQPYVTLYHWDLPLHLQESMEGWLNKEVVKYFAIYADTCFASFGDRVKHWITLNEPLQTAINGYDSGSF APGRHDQPSTEPYLASHHQILAHAAAVSIYRNKYKDKQGGQIGLVLDCEWAETGSNKTEDKVAASRRLEFQLGWYLNPLYYGDYPEVMREILGEQLPKFT EEDKELLRNPMDFVGLNHYTSRFITHATESPEESYYYKAQLMERRVEFEGGEPIGEKAASEWLYVCPWGLRKVLNYLAQKYNNPTIYVTENGMDDEDIDA PLHEVLDDNLRVRYFKGYLASVAQAIKDGVQVKGYFAWSLLDNFEWAQGYTKRFGLVYVDYKNGLSRHPKSSAYWFMRFLKGVEGKSGKEE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Potri.010G178800 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G167800 [exp]	3.74	0.9199
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.010G176000 [exp]	11.31	0.8332	IDH1.2
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.016G031500 [exp]	17.74	0.9015
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.005G095900 [exp]	20.44	0.8761
AT4G25150			HAD superfamily, subfamily III...		Potri.001G191000 [exp]	20.59	0.9045
AT2G38750		ANNAT4	annexin 4 (.1)		Potri.001G024900 [exp]	21.65	0.8441	ANNAT4.1
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150900 [exp]	23.15	0.8979
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.019G118900 [exp]	24.73	0.8869
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.018G051300 [exp]	29.58	0.8586
					Potri.013G101801 [exp]	32.32	0.8126

Compare expression of checked genes

Potri.010G178800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.