Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16260 523 / 0 ELF9 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60900 52 / 1e-06 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) AT1G50300 50 / 2e-06 TAF15 TBP-associated factor 15 (.1) AT4G36690 49 / 6e-06 ATU2AF65A U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) AT5G08695 49 / 1e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G47120 45 / 9e-05 C3HZnF RNA recognition motif (RRM)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078200 [exp] 851 / 0 AT5G16260 495 / 3e-171 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G170700 [exp] 51 / 2e-06 AT1G50300 320 / 2e-107 TBP-associated factor 15 (.1) Potri.007G028500 [exp] 47 / 2e-05 AT4G36690 601 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Potri.008G085400 [exp] 45 / 7e-05 AT1G50300 339 / 6e-115 TBP-associated factor 15 (.1) Potri.004G040900 [exp] 45 / 0.0001 AT1G60900 541 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.011G050400 [exp] 45 / 0.0002 AT1G60900 532 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Potri.001G281300 [exp] 44 / 0.0003 AT5G58470 198 / 1e-58 TBP-associated factor 15B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026858 [exp] 570 / 0 AT5G16260 566 / 0.0 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10020230 [exp] 514 / 9e-179 AT5G16260 508 / 8e-177 EARLY FLOWERING 9, RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012902 [exp] 54 / 2e-07 AT1G50300 388 / 4e-134 TBP-associated factor 15 (.1) Lus10030555 [exp] 52 / 9e-07 AT1G50300 393 / 8e-135 TBP-associated factor 15 (.1) Lus10037299 [exp] 50 / 2e-06 AT1G60900 629 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1) Lus10018227 [exp] 49 / 5e-06 AT3G47120 298 / 1e-99 RNA recognition motif (RRM)-containing protein (.1) Lus10026388 [exp] 45 / 0.0001 AT5G58470 219 / 1e-66 TBP-associated factor 15B (.1.2) Lus10042268 [exp] 45 / 0.0002 AT1G50300 220 / 8e-67 TBP-associated factor 15 (.1) Lus10024026 [exp] 45 / 0.0002 AT4G36690 678 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4) Lus10041725 [exp] 44 / 0.0003 AT4G36690 672 / 0.0 U2 snRNP auxilliary factor, large subunit, splicing factor (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] RRM PF13893 [poplar] [flax] RRM_5 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.010G179000.1 pacid=42797208 polypeptide=Potri.010G179000.1.p locus=Potri.010G179000 ID=Potri.010G179000.1.v4.1 annot-version=v4.1 ATGTCGTCTCTGAAAGATTCATCCGTCGATCTCCAAACCCAGCAGCAACAACAACCATACTCCGGTGCTGGAAATGGCTATGATGGCAATTACAACACAG TTGCGGAAGTTGGATGGTATATACTAGGTGAAGATCAACAACAGGTCGGACCTTATGTGTTTTCTGAGCTACGTGAGCATTTCTTGAATGGGTATCTCTT AGAAAGTACACTTGTATGGTCCGAAGGAAGAAGTGACTGGCAGCCATTGTCCTCAATCCCTGAGTTGATGTCAGGAACTTCTCAACAGGGATCTGATTAT TCCAGAGCAGCACTCTCTTACAATGATAACGAGGGGGAGAAGTTGCAGGAGGTCAGAGAGGCCACTTTGGGATCTGTTGGATTGAGAAATGGATCCCATT CTAACAATGAACAGAGAGCCAACTATTCTACTTTAGTGTCTTCCAACGATGATGAAGATGAGTTTGAGAAATGGCAAAGGGAGGTAAAAGAGGCAGAAGC TGAGGCAGAAAGGTTAAAAAATGGATCTCTTCCAGGCAACACTGGAGACGATTTCGGGATAGATGATTCTGATAGGATTCTGTCACCACCAGATGGTGAG GATGAATTCACAGATGATGATGGGACTACATACAAGTGGGATAGAAGCCTTAGGGCCTGGGTTCCTCAGGATAATCTATCAAGTGTAAGTGGGCAGTATG GGGTAGAACAGATGACTTTCCATGAACAAGAGGAGGTATTTCTGAATGTAAATGCTGCTGATGCCTCTTTGAAGGATGAAGCCAATGGTACTGGTGAAGT AGTAGAATCACAACGTAGTGACAAGAGGAAATTACAGGATGAGCAAGCTGATAAGGACAAGCAAGCTGATAAGAAGGAAGCCAATAAGGCCCCTGATAGT TGGTTTGAATTGAAAGTCAATACGCATGTTTATGTAACTGGGTTGCCCGATGATGTCACTGCCGAAGAAGTGGTAGAGGTATTTTCCAAGTGTGGGGTAA TTAAGGAGGATCCTGAAAAAAAAAAGCCTCGCGTGAAGATCTACGTTGACAAAGAGACTGGAAGAATAAAGGGAGATGCTCTAGTTACATATTTGAAGGA ACCCTCAGTTGATTTGGCTATGCAAATTTTGGATGGGACACCTTTGCGTCCCGGGGGCACAATTCCTATGTCGGTCACCCAAGCCAAGTTTGAGCAGAAA GGGGACAGATTTATAACCAAACAAGTAGACAGCAAGAAGAAAAGGAAGCTGAAAAAGGTTGAGGACAGGATACTTGGTTGGGGTGGCCGTGATGATGCCA AGGTGTCAATTCCAGCTACTGTAGTTCTTCGCCAAATGTTCACTCTTTCTGAAATGAGGGCTGATGAAAGCTTACGTTCAGAACTTGAGGTAGATGTTAG AGAGGAATGTGCGAAGCTTGGTCCAGTTGATTCTGTCAAGGTCTGTGAGAATAATCCACATGGTGTTGTTTTAGTGAAATTTAAAGACAGAAAGGATGCT CAAAGTTGCATAGAATTGATGAATGGGCGATGGTTTGGCGGAAGACAGGTAGATGCTAGCGAGGATGACGGATTAATTAATCATGCTTTGGTCCGGGATC ATGATGAGGATGCAGCTCGATTGGAGCAGTTTGGTGCTGAACTTGAAGCTGACTGA
AA sequence Show only first row Show all	>Potri.010G179000.1 pacid=42797208 polypeptide=Potri.010G179000.1.p locus=Potri.010G179000 ID=Potri.010G179000.1.v4.1 annot-version=v4.1 MSSLKDSSVDLQTQQQQQPYSGAGNGYDGNYNTVAEVGWYILGEDQQQVGPYVFSELREHFLNGYLLESTLVWSEGRSDWQPLSSIPELMSGTSQQGSDY SRAALSYNDNEGEKLQEVREATLGSVGLRNGSHSNNEQRANYSTLVSSNDDEDEFEKWQREVKEAEAEAERLKNGSLPGNTGDDFGIDDSDRILSPPDGE DEFTDDDGTTYKWDRSLRAWVPQDNLSSVSGQYGVEQMTFHEQEEVFLNVNAADASLKDEANGTGEVVESQRSDKRKLQDEQADKDKQADKKEANKAPDS WFELKVNTHVYVTGLPDDVTAEEVVEVFSKCGVIKEDPEKKKPRVKIYVDKETGRIKGDALVTYLKEPSVDLAMQILDGTPLRPGGTIPMSVTQAKFEQK GDRFITKQVDSKKKRKLKKVEDRILGWGGRDDAKVSIPATVVLRQMFTLSEMRADESLRSELEVDVREECAKLGPVDSVKVCENNPHGVVLVKFKDRKDA QSCIELMNGRWFGGRQVDASEDDGLINHALVRDHDEDAARLEQFGAELEAD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Potri.010G179000 [exp]	0	1
AT1G13030			sphere organelles protein-rela...		Potri.010G048700 [exp]	12.64	0.6832
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	20.97	0.7253
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.015G079400 [exp]	26.73	0.7084
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	27.05	0.7177
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	29.29	0.7194
AT1G09060			Zinc finger, RING-type;Transcr...		Potri.005G027000 [exp]	33.46	0.6853
AT3G08820			Pentatricopeptide repeat (PPR)...		Potri.016G128900 [exp]	35.91	0.7055
AT1G13030			sphere organelles protein-rela...		Potri.008G185100 [exp]	48.37	0.6863
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	49.74	0.6716
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	65.49	0.6611

Compare expression of checked genes

Potri.010G179000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.