Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02630 595 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT2G43710 575 / 0 FAB2, SSI2 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) AT5G16240 564 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02610 552 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT3G02620 541 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT5G16230 531 / 0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) AT1G43800 469 / 1e-165 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209602 [exp] 793 / 0 AT3G02630 592 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.010G179400 [exp] 616 / 0 AT3G02630 640 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.008G077900 [exp] 611 / 0 AT3G02630 657 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Potri.013G127300 [exp] 598 / 0 AT2G43710 696 / 0.0 suppressor of SA insensitive 2, FATTY ACID BIOSYNTHESIS 2, Plant stearoyl-acyl-carrier-protein desaturase family protein (.1.2) Potri.005G187600 [exp] 494 / 2e-175 AT1G43800 613 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027486 [exp] 599 / 0 AT3G02630 649 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10039241 [exp] 597 / 0 AT3G02630 645 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10028627 [exp] 489 / 5e-174 AT1G43800 598 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1) Lus10018926 [exp] 487 / 2e-172 AT1G43800 594 / 0.0 Plant stearoyl-acyl-carrier-protein desaturase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0044 [poplar] [flax] Ferritin PF03405 [poplar] [flax] FA_desaturase_2 Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Potri.010G179500.1 pacid=42799376 polypeptide=Potri.010G179500.1.p locus=Potri.010G179500 ID=Potri.010G179500.1.v4.1 annot-version=v4.1 ATGGCTCTCAAGCTGAACCTAGTAGCCTTGCCGTCCCACAATCTCAAGTCTGCCAAAGTATTTGCAGCCTCCACCATGCAGTACTCCACTACTAGAGGGT CGGAGAGTACAAAGAGGGACTCCTATTGGCCTGCCAAAGAAGTCCATTTTCAAGTGACGCATTCCATGCCACCAGAAAAGATTGAGATATTCAAGTCCAT GGAGAGTTGGACTACGAAGAACATCTTAACGCATCTAAAGCCTGTTGAGAAATCGTGGCAACCGCAAGATTTCCTGCCACAAGCTGACTCCGAAGGATTC TATGAACAAGTGAAGGAATTGAGGGAAAGATCAAAAGAACTTCCTGATGACTACTTTGTTGTTTTGGTGGGAGATATGATCACAGAAGAAGCACTTCCAA CATACCAGACAGCACTTAACACACTGGATGGAGTCAGGGACGAGACTGGTGCATCACTATCTCCTTGGGCAGTTTGGAATAGAGGATGGACTGCTGAAGA GAACAGGCACGGTGACCTTCTCAACAAGTATCTTTACCTATCTGGACGAGTGGACATGAGACAGATTGAGAAGACAATCCAGTATTTGATAGGGTGTGGA ATGGATTTCAAATTTGAGAACAACCCGTACAACTTTTTCATTTACACGTCATTCCAAGAGAGGGCAACATTCATCTCTCATGGCAACACAGCTAGACTAG CCAAGAGATATGGAGATGCGAAGCTAGCACAAATATGTGGCACCATTGCTGCAGATGAAAAGCGACATGAAATTGCATACACCATGATTGCGGAGAAGTT GTTTGAGATTGACCCAGATGCTACTGTTCTGGCCTTAGCCGACATGATGAGGAAAAAAATCGTTATGCCAGCCCTCTTGATGTACGATGGTCAGGATGAT AACCTTTTTGAGAACTTCTCAGCTGTTGCCCAGAATCTTGGGGTCTATACTGCCAAGGACTATGCCGATAATTTAGAATTTTTGGTGGGAAGATGGAATG TAGCGGGATTGACAGGTTTGTCTAGTGAAGGACGCAGGGCTCAAGATTTTGTGTGTAGATTGCCTTCAAGGATTAGAAGGTTAGAAGAGAGAGCTCAAGA AAAGGCAAAGCAAGCATCAACCATTCCTTTTAGCTGGATTCATGGTAGAGAAGTAAGAGTTTGA
AA sequence Show only first row Show all	>Potri.010G179500.1 pacid=42799376 polypeptide=Potri.010G179500.1.p locus=Potri.010G179500 ID=Potri.010G179500.1.v4.1 annot-version=v4.1 MALKLNLVALPSHNLKSAKVFAASTMQYSTTRGSESTKRDSYWPAKEVHFQVTHSMPPEKIEIFKSMESWTTKNILTHLKPVEKSWQPQDFLPQADSEGF YEQVKELRERSKELPDDYFVVLVGDMITEEALPTYQTALNTLDGVRDETGASLSPWAVWNRGWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGCG MDFKFENNPYNFFIYTSFQERATFISHGNTARLAKRYGDAKLAQICGTIAADEKRHEIAYTMIAEKLFEIDPDATVLALADMMRKKIVMPALLMYDGQDD NLFENFSAVAQNLGVYTAKDYADNLEFLVGRWNVAGLTGLSSEGRRAQDFVCRLPSRIRRLEERAQEKAKQASTIPFSWIHGREVRV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179500 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G032900 [exp]	1.41	0.9824
AT5G37970			S-adenosyl-L-methionine-depend...		Potri.017G122000 [exp]	2.44	0.9788
AT5G06060			NAD(P)-binding Rossmann-fold s...		Potri.006G089700 [exp]	2.82	0.9752
AT2G45220			Plant invertase/pectin methyle...		Potri.002G145500 [exp]	3.46	0.9785	Pt-PE9.2
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	5.65	0.9695	Pt-CWINV.1
AT1G30760			FAD-binding Berberine family p...		Potri.001G463400 [exp]	6.70	0.9725
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139400 [exp]	7.34	0.9675
AT1G58170			Disease resistance-responsive ...		Potri.005G100600 [exp]	9.38	0.9598
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	9.79	0.9725
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	10.90	0.9701

Compare expression of checked genes

Potri.010G179500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.