Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G65450 566 / 0 HXXXD-type acyl-transferase family protein (.1.2.3) AT3G48720 221 / 7e-67 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT5G41040 220 / 1e-66 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 218 / 6e-66 HXXXD-type acyl-transferase family protein (.1) AT5G48930 192 / 7e-56 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) AT1G27620 183 / 1e-52 HXXXD-type acyl-transferase family protein (.1) AT5G57840 171 / 7e-48 HXXXD-type acyl-transferase family protein (.1) AT1G28680 162 / 8e-45 HXXXD-type acyl-transferase family protein (.1) AT2G19070 157 / 1e-42 SHT spermidine hydroxycinnamoyl transferase (.1) AT1G03390 157 / 1e-42 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100800 [exp] 240 / 3e-74 AT5G41040 644 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.001G326300 [exp] 234 / 7e-72 AT5G41040 677 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.002G244600 [exp] 217 / 2e-65 AT1G65450 205 / 5e-61 HXXXD-type acyl-transferase family protein (.1.2.3) Potri.017G068500 [exp] 214 / 1e-64 AT5G41040 583 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Potri.018G105500 [exp] 208 / 5e-62 AT5G48930 556 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Potri.014G166600 [exp] 205 / 7e-61 AT5G41040 394 / 2e-134 HXXXD-type acyl-transferase family protein (.1.2) Potri.006G165200 [exp] 196 / 3e-57 AT2G19070 595 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.018G109900 [exp] 189 / 9e-55 AT2G19070 563 / 0.0 spermidine hydroxycinnamoyl transferase (.1) Potri.001G448000 [exp] 186 / 2e-53 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029920 [exp] 511 / 2e-179 AT1G65450 490 / 9e-172 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10004481 [exp] 516 / 3e-179 AT1G65450 490 / 3e-169 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10043189 [exp] 231 / 6e-71 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10012552 [exp] 231 / 1e-70 AT5G41040 642 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 230 / 2e-70 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10038184 [exp] 212 / 1e-63 AT1G65450 200 / 2e-59 HXXXD-type acyl-transferase family protein (.1.2.3) Lus10026123 [exp] 197 / 1e-57 AT5G48930 597 / 0.0 hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1) Lus10035190 [exp] 191 / 2e-55 AT5G41040 419 / 5e-144 HXXXD-type acyl-transferase family protein (.1.2) Lus10005439 [exp] 189 / 9e-55 AT5G41040 364 / 2e-122 HXXXD-type acyl-transferase family protein (.1.2) Lus10032019 [exp] 188 / 2e-54 AT5G41040 446 / 1e-154 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.010G180000.1 pacid=42796858 polypeptide=Potri.010G180000.1.p locus=Potri.010G180000 ID=Potri.010G180000.1.v4.1 annot-version=v4.1 ATGGAATGTATATATACAGGGCACAGACCTTCACAAGAACCAAACCAAGCCAGATTGATCATGGGAATCCAGTGCCAGGAAACCCCTCCTCCCCTTCAAG ACCTTAAGGTCACGATCCAAAACTCTTCTTTGGTTTTTCCAAACCATGAAACAGCTCAGAGGAAATCCATGTTCCTGTCAAACATCGACCAAGTGCTCAA TTTCAATGTCGAAACAGTCCATTTTTTTGCATCCCATGAAGACTTTCCTCCTCAAACTGTGGCCGAGAAGATAAAAGATGCGCTTGAGAAGATACTGGTG CCATATGATTTCTTGGCTGGAAGATTGAAGTCGAACGCCAGAACAGGTCGTTTGGAGGTTGATTGTAATGGGGCTGGGGCTGGCTTCGTGGTGGCCTCTA GTGAGTGTACATTGGATGAGATCGGGGACTTGGTTTATCCTAACGCTGCTTTTGCTAAGCTAGTTGTTAACAGTTCGGATCATAGCTTGGAAAAAGATGG TAAACTACTGTGCATTATCCAGGTAACATCATTTAAGTGTGGTGGTTTTGCAATGGGCATATCAACCAGCCATGCAACATTTGATGGGATAAGCTTCAAG ATCTTCTTACAAAACTTGGCTGCCCTAGCTGGTGGCAAACCCCTGGCGGTCACTCCCTGCAACGACCGTGAACTACTAGCAGCTCGATCTCCACCACGTG TCACCTTCCCTCACCCTGAATTGGTCAAACTTCAGACTCACCTGGGGCAAGAATTGAATGCTCCGGTCTTTGATGACGCCCAAGAAGCCCTAGACTTCAA GATTTTCCGGCTAACTTCCGGCAACTTCTCCGACATGAAAGAGAAGGCCAAGACAAGTCCAAGCGCCCGCGTTTCTGGGTTTAATGTGGTGACTGCTCAT ATTTGGAGATGCAAGGCACTGTCACAATCGGAAGCCCAGGATCCCGATAGAGTGTCAACAATTCTCTATGCTGTCAACATTAGGCCAAGACTGACCCCTC CTTTACCAGAATCATATGCTGGAAATGCTGTGTTAACTGCCTACGCAAATGCTACGTGCAAGGAGCTGCGAGAGGGGCCAATCTCTAAATTGGTGGAGAG AGTGGCAGAGGGTTCAAAGAGAATGACTGACGAGTATGCGCGGTCTGCTATAGATTGGGGTGAGATTCACAAAGGATTTCCGCATGGAGATTTCTTGCTA TCATCTTGGTGGAAATTAGGATTTGATGAAGTGGACTATCCATGGGGGTGCCCCAGGTACAGTTGTCCTGTGGTGTACCACAGAAAGGATATTATCTTGC TTTTCCCGGATATCGATGACAAGAATAGCGTCAATGTTCTGGTTGCCCTGCCCTGCAAGGAAATGGAAAAGTTTGAAAGCCTCTTCCACAAATTCTTATC GGCTTGA
AA sequence Show only first row Show all	>Potri.010G180000.1 pacid=42796858 polypeptide=Potri.010G180000.1.p locus=Potri.010G180000 ID=Potri.010G180000.1.v4.1 annot-version=v4.1 MECIYTGHRPSQEPNQARLIMGIQCQETPPPLQDLKVTIQNSSLVFPNHETAQRKSMFLSNIDQVLNFNVETVHFFASHEDFPPQTVAEKIKDALEKILV PYDFLAGRLKSNARTGRLEVDCNGAGAGFVVASSECTLDEIGDLVYPNAAFAKLVVNSSDHSLEKDGKLLCIIQVTSFKCGGFAMGISTSHATFDGISFK IFLQNLAALAGGKPLAVTPCNDRELLAARSPPRVTFPHPELVKLQTHLGQELNAPVFDDAQEALDFKIFRLTSGNFSDMKEKAKTSPSARVSGFNVVTAH IWRCKALSQSEAQDPDRVSTILYAVNIRPRLTPPLPESYAGNAVLTAYANATCKELREGPISKLVERVAEGSKRMTDEYARSAIDWGEIHKGFPHGDFLL SSWWKLGFDEVDYPWGCPRYSCPVVYHRKDIILLFPDIDDKNSVNVLVALPCKEMEKFESLFHKFLSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G65450			HXXXD-type acyl-transferase fa...		Potri.010G180000 [exp]	0	1
					Potri.007G068000 [exp]	1.41	0.9948
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.013G007000 [exp]	2.64	0.9968
AT2G18360			alpha/beta-Hydrolases superfam...		Potri.009G116800 [exp]	3.87	0.9920
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Potri.010G032800 [exp]	5.29	0.9918
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.019G001200 [exp]	6.24	0.9941
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Potri.018G099400 [exp]	8.48	0.9892
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Potri.015G089700 [exp]	9.32	0.9860
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G113100 [exp]	9.79	0.9923
AT2G38540		ATLTP1, LP1	ARABIDOPSIS THALIANA LIPID TRA...		Potri.004G086600 [exp]	13.41	0.9810	Pt-MALD3.1
AT5G02890			HXXXD-type acyl-transferase fa...		Potri.003G082100 [exp]	13.85	0.9915

Compare expression of checked genes

Potri.010G180000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.