Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05860 180 / 1e-55 unknown protein AT2G31600 179 / 7e-55 unknown protein AT3G53860 170 / 1e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G035200 [exp] 213 / 2e-68 AT2G31600 238 / 2e-77 unknown protein Potri.007G126300 [exp] 206 / 6e-66 AT2G31600 244 / 2e-80 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026896 [exp] 193 / 2e-60 AT2G31600 241 / 5e-79 unknown protein Lus10025558 [exp] 184 / 8e-57 AT2G31600 239 / 7e-78 unknown protein Lus10027016 [exp] 127 / 1e-36 AT2G31600 131 / 2e-38 unknown protein Lus10003417 [exp] 101 / 1e-25 AT2G31600 157 / 2e-47 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13891 [poplar] [flax] zf-C3Hc3H Potential DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G180200.2 pacid=42798447 polypeptide=Potri.010G180200.2.p locus=Potri.010G180200 ID=Potri.010G180200.2.v4.1 annot-version=v4.1 ATGGCCAACCCTCCCTCACCACCGCCGCCGCCTCCTCCACAACCTTCCGATCCCATCAGAATCGACGGCGCAGATGAAGACGCGGTTCTCTCATCTTCAG CGTACCTAACTCACCAAGAACTCTTAACTCGGCGATCTCGCCGATTAAAGCAACTCGCTCAGATCTTCCGAGCCCATTACTGGACCTTAATGGAAGAGCT CAAAATCAAACACAAAGAGTATTACTGGATACATGGGAAAAGTCCATATAAAGAAGATGAGAAAAACAAGAAAAGAAAGAGAGATCTTAACAGTGATAAA GAGAATTTTGAATGGAATACGAAATTAGGGATTAATGGCGGCGGTGAAGTGGAGGCGGAGGAGAGAGAGGAAGCGGAGGAGAGAGAGGAGGAAGGGGTAA GGAAATGCTCGGCTAGTGGGTGTAAAGCGAAACCGATGGCTTTAACGACGTTCTGCTATACACATATATTATCGGATTCTAAACAAAAGCTTTATAAAGG CTGCGCCTATGTTGTTAAAAGTGCACAGGGAAGGCATGTACTTTGTGGGAAACCAGCTCTGATATCAACTGTCCCCTCCCTCTGCCCAATGCATTGTCAA AAGGCTGAAAGACTTGTAGGAAGAGCCTTGAAAAAGGCAGGTCTCAGTGTCTCTTCACCGAGTAAGCTTGCTCCTAAATTGCATGTGATAGTCACGGAAT TTGTCCGCCAAATCCAAACCAAAAGAAGGGCTGCACTGAAGGAAAATGTATCTGAAGATCACATCAAGGAGGATAAAATTTCCCAAGGCTCTTGA
AA sequence Show only first row Show all	>Potri.010G180200.2 pacid=42798447 polypeptide=Potri.010G180200.2.p locus=Potri.010G180200 ID=Potri.010G180200.2.v4.1 annot-version=v4.1 MANPPSPPPPPPPQPSDPIRIDGADEDAVLSSSAYLTHQELLTRRSRRLKQLAQIFRAHYWTLMEELKIKHKEYYWIHGKSPYKEDEKNKKRKRDLNSDK ENFEWNTKLGINGGGEVEAEEREEAEEREEEGVRKCSASGCKAKPMALTTFCYTHILSDSKQKLYKGCAYVVKSAQGRHVLCGKPALISTVPSLCPMHCQ KAERLVGRALKKAGLSVSSPSKLAPKLHVIVTEFVRQIQTKRRAALKENVSEDHIKEDKISQGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05860			unknown protein		Potri.010G180200 [exp]	0	1
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G188900 [exp]	1.73	0.8980
					Potri.003G089201 [exp]	8.77	0.8485
AT1G78070			Transducin/WD40 repeat-like su...		Potri.002G094100 [exp]	10.39	0.7852
					Potri.004G234150 [exp]	12.80	0.8926
AT3G17890			unknown protein		Potri.008G145400 [exp]	13.78	0.7885
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Potri.008G026900 [exp]	16.30	0.8383
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.017G106500 [exp]	17.88	0.8034
AT2G20560			DNAJ heat shock family protein...		Potri.017G016000 [exp]	27.49	0.8432
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	28.56	0.8603
AT4G34100			RING/U-box superfamily protein...		Potri.001G304100 [exp]	31.96	0.8554

Compare expression of checked genes

Potri.010G180200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.