Plant FIBer expression Database

Potri.010G180400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G36700 514 / 0 ATPGLP1, 2-PHOSPHOGLYCOLATEPHOSPHATASE1 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
AT5G36790 514 / 0 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.3)
AT5G47760 377 / 7e-131 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G077400
[exp]
639 / 0 AT5G36700 508 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Potri.016G004200
[exp]
406 / 2e-142 AT5G47760 516 / 0.0 2-phosphoglycolate phosphatase 2 (.1)
Potri.006G003501
[exp]
74 / 2e-16 AT5G47760 96 / 9e-26 2-phosphoglycolate phosphatase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042429
[exp]
526 / 0 AT5G36700 541 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10026241
[exp]
522 / 0 AT5G36700 536 / 0.0 2-phosphoglycolate phosphatase 1 (.1.2.3.4)
Lus10039102
[exp]
394 / 2e-137 AT5G47760 497 / 2e-179 2-phosphoglycolate phosphatase 2 (.1)
Lus10038761
[exp]
360 / 3e-124 AT5G47760 439 / 4e-157 2-phosphoglycolate phosphatase 2 (.1)
Lus10033024
[exp]
236 / 4e-77 AT5G47760 288 / 1e-98 2-phosphoglycolate phosphatase 2 (.1)
Lus10038760
[exp]
227 / 2e-73 AT5G47760 305 / 1e-105 2-phosphoglycolate phosphatase 2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0137 HAD PF13242 Hydrolase_like HAD-hyrolase-like
Representative CDS sequence
>Potri.010G180400.4 pacid=42797781 polypeptide=Potri.010G180400.4.p locus=Potri.010G180400 ID=Potri.010G180400.4.v4.1 annot-version=v4.1
ATGCTAAGCAGGACAGTTGTTTCAGTGTCTGCTGTTTCTTCTTCCTCTTCAACATCTCCATCTCGAATCTTGTGCAAAGTAAACCCAACAATCCCTAAAT
TCTTGGGTCTGAAAGGACCCTCTCATAATTTCACAAACTGTACCACATGGAACAAAAATTTGAACTTGAGTAGAAAGTGCAATACAAGAATGGAGAATTT
CACGACCAAAGCATCAGCAGCAGCTCAGCCTTTAAAAAACGCAGACGAGCTCATTGACTCTGTTGAGACTTTCATCTTTGATTGTGATGGAGTTATATGG
AAAGGAGATAAATTGATCGACGGCGTCCCTCAAACTCTTGATATGCTCCGTTCAAGGGGGAAGAGACTAGTTTTTGTTACAAACAACTCAACAAAGTCTA
GGAAACAATATGGTAAAAAGTTCGAGACACTTGGTCTTGATGTCAGTGAGGAAGAAATTTTCGCATCATCCTTTGCAGCTGCGGCCTATTTGAAGTCAAT
TGATTTCCCAAAAGATAAAAAGGTTTACGTGGTTGGTGAGGATGGCATCTTGAAGGAGCTTGAGCTTGCTGGATTTCAGTATCTTGGTGGGCCAGAAGAT
GGTGGGAAAAAGATAGAGCTGAAGCCTGGGTTTCTAATGGAGCACGATAAGGATGTTGGGGCAGTTGTTGTTGGATTTGATCGCTATTTCAACTACTACA
AAGTCCAGTATGGAACACTCTGTATAAGGGAAAATCCTGGATGCCTCTTCATTGCTACAAATCGCGATGCAGTCACCCATCTTACAGATGCTCAGGAGTG
GGCAGGCGGTGGTTCTATGGTCGGTGCTTTCGTTGGTTCAACTCAGCGTGAGCCACTAGTTGTGGGAAAGCCCTCAACTTTTATGATGGATTACTTAGCC
AACAAATTCGGGATTCTCAAGTCACAGATATGCATGGTTGGGGACAGATTGGATACTGATATTCTGTTTGGACAAAATGGTGGTTGCAAAACTCTTCTCG
TTCTCTCTGGTGTGACCTCATTGTCAATGCTTCAAAGTCCAGGCAACTCCATCCAACCAGATTTCTACACCAACAAAATTTCTGATTTTCTTTCCCTCAA
AGCTGCAGCTGTATGA
AA sequence
>Potri.010G180400.4 pacid=42797781 polypeptide=Potri.010G180400.4.p locus=Potri.010G180400 ID=Potri.010G180400.4.v4.1 annot-version=v4.1
MLSRTVVSVSAVSSSSSTSPSRILCKVNPTIPKFLGLKGPSHNFTNCTTWNKNLNLSRKCNTRMENFTTKASAAAQPLKNADELIDSVETFIFDCDGVIW
KGDKLIDGVPQTLDMLRSRGKRLVFVTNNSTKSRKQYGKKFETLGLDVSEEEIFASSFAAAAYLKSIDFPKDKKVYVVGEDGILKELELAGFQYLGGPED
GGKKIELKPGFLMEHDKDVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLFIATNRDAVTHLTDAQEWAGGGSMVGAFVGSTQREPLVVGKPSTFMMDYLA
NKFGILKSQICMVGDRLDTDILFGQNGGCKTLLVLSGVTSLSMLQSPGNSIQPDFYTNKISDFLSLKAAAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G36700 ATPGLP1, 2-PHOS... 2-phosphoglycolate phosphatase... Potri.010G180400
[exp]
0 1
AT3G14420 Aldolase-type TIM barrel famil... Potri.001G394400
[exp]
1.00 0.9943
AT2G22780 PMDH1 peroxisomal NAD-malate dehydro... Potri.009G081600
[exp]
1.41 0.9889 MDHG.1
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.002G073000
[exp]
3.16 0.9826
AT1G32060 PRK phosphoribulokinase (.1) Potri.001G134000
[exp]
3.46 0.9853
AT4G03520 ATHM2 Thioredoxin superfamily protei... Potri.005G186800
[exp]
3.46 0.9860 PtrTrxm9
AT5G23060 CaS calcium sensing receptor (.1) Potri.015G052200
[exp]
7.34 0.9811
AT1G42970 GAPB glyceraldehyde-3-phosphate deh... Potri.005G254100
[exp]
8.83 0.9760 Pt-GAPB.2
AT1G44575 CP22, PSBS, NPQ... PHOTOSYSTEM II SUBUNIT S, NONP... Potri.002G083500
[exp]
8.94 0.9804 NPQ4.1
AT5G55570 unknown protein Potri.011G085700
[exp]
10.39 0.9800
AT5G55570 unknown protein Potri.011G085501
[exp]
10.48 0.9787

Potri.010G180400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.