Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17410 993 / 0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT5G06680 140 / 2e-34 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT3G53760 84 / 2e-16 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT1G80260 54 / 3e-07 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G20570 44 / 0.0004 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G059900 [exp] 139 / 6e-34 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.006G194200 [exp] 139 / 7e-34 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.016G000100 [exp] 56 / 1e-07 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.014G128400 [exp] 50 / 6e-06 AT3G53760 1076 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Potri.009G153300 [exp] 44 / 0.0005 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026855 [exp] 829 / 0 AT5G17410 805 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10020228 [exp] 442 / 4e-152 AT5G17410 382 / 3e-129 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10020227 [exp] 239 / 2e-73 AT5G17410 280 / 3e-89 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) Lus10016246 [exp] 141 / 1e-34 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029296 [exp] 126 / 6e-30 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10018892 [exp] 54 / 4e-07 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 52 / 1e-06 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10003353 [exp] 41 / 0.0003 AT3G43610 136 / 2e-38 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [poplar] [flax] GCP PF04130 [poplar] [flax] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Potri.010G180700.2 pacid=42799189 polypeptide=Potri.010G180700.2.p locus=Potri.010G180700 ID=Potri.010G180700.2.v4.1 annot-version=v4.1 ATGGAAAAAGCAACAGCAACCTCAACATCGTGCCCTTCAACACCTCGCTGGAATATTGACAGACCTTTCCTCACCGGCCGTTTCCACCAGGAAACGAAAG GAACTTCGCGGCTCGCTGATACCAAGGGATTTTCTATGGATTTATCTAGCCATGGTTTGGAGAGACCCATTGGCTATTACAATGCTGCTGTTCAGGAACT TATCGTCATTGACGACCTCTTGTCTGCTATGGTTGGAATTGAAGGACGATATATTTCAATTAGAAGAGTACGTGGAAAGGAGGATCATATCTCTTTCCAG GTCGATGCTTCCATGGACTTGGCAATCCAGGAACTGGCAAAAAGGATGTTCCCTTTGTGTGAGAGCTATCTGTTGATTGACCAGTTTGTCGAGTCCAGAT CACAATTCAAGAATGGTTTAGTTAATCATGCCTTTGCTGCTGCGCTCAAGGCACTTCTTGTAGATTATCAGGCCATGGTTGCACAGCTTGAACACCAATT TCGACTTGGAAGACTTTCCATACAAGGATTGTGGTTTTACTGTCAGCCCATGATGGGTTCAATGCAAGCTTTATCCATTGTGATACAGAAGGCTTCAGCA AATAATTTTACCGGTTCGTCTGTCCTTAACCTCCTGCAGAGTCAGGCTAAGGCAATGGCTGGTGATAATGCAGTGAGATCACTGCTAGAAAAGATGACGC AATGTGCAAGCAATGCATACCTTAGCATATTAGAGAGGTGGGTCTATGAAGGAGTGATTGATGATCCATATGGTGAATTTTTCATTGCTGAGAACAAATC TCTTCAAAAGGAGAGCCTCACACAAGATTATGATGCCAAATATTGGCGGCAACGTTACAGCCTTAAGGAAGGAATTCCTAGCTTCCTTGCAAATATTGCT GGGACAATTTTGACCACGGGAAAATACTTGAATGTCATGAGAGAATGTGGACACAATGTCCAGGTCCCTGCCTCAGAAAATTATAAACTAACGATCTTTG GCTCAAACCATCATTATCTAGAGTGTATAAAAGCTGCTTATGACTTTGCCAGCGGCGAGCTCTTAAATCTCATTAAAGAAAAGTATGATCTAATGGGAAA GCTGCGGTCTATTAAGCACTACCTTCTTCTTGATCAGGGTGACTTTTTGGTGCATTTTATGGATATAGCTCGGGATGAGCTCACAAAAAAGTTTGATGAG ATTTCAGTGGAGAAGTTACAGTCGCTGTTAGACCTTGCTCTGCGCACCACAGCAGCTGCAGTAGATCCATGTCATGAGGACTTGACATGCTGTGTGGAAA GATCATCCTTGCTTAAAAGATTGAGCACCCTGAAAGATCTTGAAGTGAGGACTGTTTCCGATGGTAATGCTCTAGCAGAGCCACTGAACATTACTGGTCT TGAGACATTTTCATTGAGTTACAAGGTTGAATGGCCATTATCTATTGTTATCTCAAGAAAAGCCCTGGCAAAATACCAGTTGATTTTCCGCTTTCTGTTT CGCTGTAAACATGTAGACCGCCAGCTTTGCGGAGCTTGGCAAGTGCATCAAGGAGTTCGTGCACTTAATATGCGTGGAACCGCCATCTCTAGATCATCTC TAATCTGTCGCAGTATGCTGAAATTCATTAACAGCCTTCTTCACTATCTAACATTTGAGGTTCTTGAACCTAACTGGCATGTGATGCACAATAGACTTCA GACGGCCAAAAGCATAGATGAGGTTATTCAATATCATGATCTTTTCCTCGACAAGTGCCTGAGAGAATGTCTGCTTCTTTTACCTGAACTGCTCAAGAAG GTGGAGAGGCTGCAATCCCTATGCTTGCAGTATGCAGCTGCAACTCAGTGGTTGATATCATCTTCCATCAGCATTCCAAAGCTAGAGGAACATTCCAAAT CAAGCCGCCCATCTCGCATGCTAACAATGACAACTGAAAACGCAAGTGTCACTGATTCTATACTCAAATTTGAGAGGGAATTCAATGCTGAGCTTCAGAG TCTGGGACCAATCTTGAGCAATAGTTCCCAAGCAGAGCCATATTTGACTCATCTTGCACAGTGGATTCTTGGAGATGGACACGACCAATAA
AA sequence Show only first row Show all	>Potri.010G180700.2 pacid=42799189 polypeptide=Potri.010G180700.2.p locus=Potri.010G180700 ID=Potri.010G180700.2.v4.1 annot-version=v4.1 MEKATATSTSCPSTPRWNIDRPFLTGRFHQETKGTSRLADTKGFSMDLSSHGLERPIGYYNAAVQELIVIDDLLSAMVGIEGRYISIRRVRGKEDHISFQ VDASMDLAIQELAKRMFPLCESYLLIDQFVESRSQFKNGLVNHAFAAALKALLVDYQAMVAQLEHQFRLGRLSIQGLWFYCQPMMGSMQALSIVIQKASA NNFTGSSVLNLLQSQAKAMAGDNAVRSLLEKMTQCASNAYLSILERWVYEGVIDDPYGEFFIAENKSLQKESLTQDYDAKYWRQRYSLKEGIPSFLANIA GTILTTGKYLNVMRECGHNVQVPASENYKLTIFGSNHHYLECIKAAYDFASGELLNLIKEKYDLMGKLRSIKHYLLLDQGDFLVHFMDIARDELTKKFDE ISVEKLQSLLDLALRTTAAAVDPCHEDLTCCVERSSLLKRLSTLKDLEVRTVSDGNALAEPLNITGLETFSLSYKVEWPLSIVISRKALAKYQLIFRFLF RCKHVDRQLCGAWQVHQGVRALNMRGTAISRSSLICRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQYHDLFLDKCLRECLLLLPELLKK VERLQSLCLQYAAATQWLISSSISIPKLEEHSKSSRPSRMLTMTTENASVTDSILKFEREFNAELQSLGPILSNSSQAEPYLTHLAQWILGDGHDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	0	1
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Potri.001G357700 [exp]	2.00	0.7749
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.007G112400 [exp]	3.46	0.7625
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	6.32	0.7563
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.013G041300 [exp]	6.32	0.7465	IAA8.2
AT5G50150			Protein of Unknown Function (D...		Potri.012G088300 [exp]	6.48	0.7467
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Potri.015G027600 [exp]	6.70	0.7635
AT4G38640			Plasma-membrane choline transp...		Potri.004G173600 [exp]	7.74	0.7398
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Potri.015G029000 [exp]	8.30	0.7290
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	14.28	0.7735
AT4G15450			Senescence/dehydration-associa...		Potri.018G087500 [exp]	17.29	0.7391

Compare expression of checked genes

Potri.010G180700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.