Plant FIBer expression Database

Potri.010G180800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G03305 867 / 0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G077000
[exp]
1312 / 0 AT3G03305 907 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026788
[exp]
917 / 0 AT3G03305 808 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Potri.010G180800.6 pacid=42797343 polypeptide=Potri.010G180800.6.p locus=Potri.010G180800 ID=Potri.010G180800.6.v4.1 annot-version=v4.1
ATGGAAAAACGACAGTCTCCACAGTTTAGGGAGATGGGTCTTGTGGTTTTGATGCTGTTATGCCTCACTACCACCGTGCCCACTTCAGTTTCTATACAAC
AAGGAGGAGGAGGAGCAGAGGAGTTGGTTTCTTCACAGCCCAGAAAATGGCAAGACAGAGTTATAGAAGTGAAAGGAGGGCCAGAATCAGTTGTATGGAT
AGTGCAGCTCTCTGATCTCCACTTTAGTGTCCACCATCCTGAAAGAGCCCTTGACTTCAAGAAAATTGTGGGCCCTGCTCTTAAGATGATTAACCCATCT
CTTGTTCTCATCACCGGTGATCTCACAGATGGGAAAAGCAAGGACTTGTTAACAATGAAACAAAATGAGGATGAGTGGATAGAATATCAGAATGTAATGG
AAGATGTTGCGAGAAGCAGTGGACTAGACAAGAGCATCTTCTATGATCTCAGAGGAAACCATGATAATTTTGGTGTACCAGTCATTGGTGGTTCGTTTGA
TTTCTTTTCAAATTATAGTATTAATGGGCAGTTCGGAAGAAAAGGAAATGTCAACAGTGTCACACTTGAGACTGGTGACCGCAAACATGTATTTGTTGGG
TTGGACAGCACGATGTCTACTGGTTTACGAGGGCCAACTAATCTTTTTGGGCATCCAACTGACCAACTACTGTCTCAAATAGATTCACAGCTATCGCAAT
GGGATTCTCAAAAAGGAAAATCCGTAACTAAGATATCCTTTGGGCATTTTCCACTTTCATTCTCGGCATTCTCAGAGTCTCAGAAAAGCTTGAGAGATGT
TTTTCTGAAGCATTCAGTGTCAGCTTATTTATGTGGGCATCTTCACACGAGGTTCGGTAAGAATTTGAAACGGCATCACCAGTCAAATGAAAAATTCCTG
TCATCACATAGGTTTTTTCAGTTAAACATGCACCAAGAACCTTCTGAGAATCCTAAAAACTGTTTGTTTCAAGCACCGCCACTTAAGGAGTTCTGGGAGT
GGGAGATGGGTGATTGGAGGAAAAGTAGAGCTATGCGAATTGTGGCTGTTGACAGAGGTCATGTTTCATACCTGGACATTGACTTCAAATCAGGAACCAA
AAAAACCATTGTGTTGCCCACATTTCCACTGGATTCCCGCTTCATGTTAACATCTTCATTACATCAGATGTATGGGTGTCAACACATGGTCCCTTTTTCC
TTTGAGACAATCAGATGCCTTGTGTTTTCTGTTTCTCCAATCACGTCTGTTGTGGCTAGGATCTATGACACAAGACCAGGGAATCCCCTTATGATCATGG
AGACAACCATGACCAAGTTTGTGAGGGATATATCCAGGGGAGACATTTATGCAGCTGCATGGAACTATAAAGCCTTTGAGGATCCGTCTCCTGTTAGATT
TTGGCTGCAAATAGAAGTAATTGATGTGATGGGAAGATCAACTTTGTCTGAACTAAGGCCATTTTCTGTAAACGGTCTAAGTGCTAAGATCTCATGGACA
TGGAAGGAATTTTTTGTCATGGGTTGTCAATGGGCTGCTTTGTACTACCCGATATTCTGGTCTGCAGTGTTTTTAATGCTCTCCATTCTTCTCATTCCAA
AATTTGTCCTCATGTTCTCTAAGAAGCAGTACTCTTACAAGAATTTCATTTCTGAAAAAGGCTTAATAAATTGTATAGCATGGGTTTTGCTGGACCTCTG
CAGGGTTCATGTAGTGTGGTTTGGTTTTTTAGGATACTTGATCTACCTCGTATCATGTCCCTGGCTAATTGGGCAAGTTTTCACTGATGGTGGGAACAGG
GGGTACATGACCTGCATGGGATGGCTGGTGAAAATTTTTAACAGCAGGGAAAAACACGATTATATTGGATCTCCAGATATAATGGTGGTTGTGCTTCCAC
ATTTCTTCTTTGTGGTTATACCTTCTATTTTGGTTGCTGGAGCATTGGCTGCTGAAAGAGGTATCTACAAAGAGCATTTTCTATCACTTTCAGGCAAGAA
AGAAGACGACGATTCTAGTCAGAAGAATAAGAGATCAGGAACGTATGATAACCACAGGCATAGAAGATCAAAATTTGATTTTGTGGAGAGGTGGTTTCGG
AAAGTTCTCCTGGCAGCTTGCTTGGTGATTTGTTGGAAACATTTTACGAATTGCAAAGCTCTCACGAAAGCATATGAGATGAACCCGTTGCTTCACTTTC
CAGTGTATAGCCTTGCAATTCCACTGCTGTTGGCTTGCACCGTGTACAAAACCAGGAGTATTCAATAA
AA sequence
>Potri.010G180800.6 pacid=42797343 polypeptide=Potri.010G180800.6.p locus=Potri.010G180800 ID=Potri.010G180800.6.v4.1 annot-version=v4.1
MEKRQSPQFREMGLVVLMLLCLTTTVPTSVSIQQGGGGAEELVSSQPRKWQDRVIEVKGGPESVVWIVQLSDLHFSVHHPERALDFKKIVGPALKMINPS
LVLITGDLTDGKSKDLLTMKQNEDEWIEYQNVMEDVARSSGLDKSIFYDLRGNHDNFGVPVIGGSFDFFSNYSINGQFGRKGNVNSVTLETGDRKHVFVG
LDSTMSTGLRGPTNLFGHPTDQLLSQIDSQLSQWDSQKGKSVTKISFGHFPLSFSAFSESQKSLRDVFLKHSVSAYLCGHLHTRFGKNLKRHHQSNEKFL
SSHRFFQLNMHQEPSENPKNCLFQAPPLKEFWEWEMGDWRKSRAMRIVAVDRGHVSYLDIDFKSGTKKTIVLPTFPLDSRFMLTSSLHQMYGCQHMVPFS
FETIRCLVFSVSPITSVVARIYDTRPGNPLMIMETTMTKFVRDISRGDIYAAAWNYKAFEDPSPVRFWLQIEVIDVMGRSTLSELRPFSVNGLSAKISWT
WKEFFVMGCQWAALYYPIFWSAVFLMLSILLIPKFVLMFSKKQYSYKNFISEKGLINCIAWVLLDLCRVHVVWFGFLGYLIYLVSCPWLIGQVFTDGGNR
GYMTCMGWLVKIFNSREKHDYIGSPDIMVVVLPHFFFVVIPSILVAGALAAERGIYKEHFLSLSGKKEDDDSSQKNKRSGTYDNHRHRRSKFDFVERWFR
KVLLAACLVICWKHFTNCKALTKAYEMNPLLHFPVYSLAIPLLLACTVYKTRSIQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G03305 Calcineurin-like metallo-phosp... Potri.010G180800
[exp]
0 1
AT5G01780 2-oxoglutarate-dependent dioxy... Potri.016G132300
[exp]
4.89 0.7672
AT3G62390 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 ... Potri.014G120201
[exp]
13.26 0.7695
AT4G28760 Protein of unknown function (D... Potri.014G194600
[exp]
31.36 0.7098
AT1G47310 unknown protein Potri.014G036300
[exp]
31.62 0.7038
AT1G51550 Kelch repeat-containing F-box ... Potri.008G006300
[exp]
34.02 0.7410
AT2G27600 ATSKD1, VPS4, S... VACUOLAR PROTEIN SORTING 4, SU... Potri.008G022216
[exp]
42.95 0.6726
AT3G50950 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.... Potri.019G125400
[exp]
51.87 0.7213
AT1G80420 ATXRCC1 BRCT domain-containing DNA rep... Potri.001G178100
[exp]
68.12 0.6747
AT4G22758 unknown protein Potri.001G116200
[exp]
78.22 0.6479
AT2G01060 GARP myb-like HTH transcriptional r... Potri.016G117000
[exp]
101.35 0.7043

Potri.010G180800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.