Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18650 50 / 6e-07 MADS AGL103 AGAMOUS-like 103 (.1) AT5G65330 47 / 4e-06 MADS AGL78 AGAMOUS-like 78 (.1) AT4G11250 44 / 5e-05 MADS AGL52 AGAMOUS-like 52 (.1) AT2G22630 43 / 6e-05 MADS AGL17 AGAMOUS-like 17 (.1) AT4G02235 42 / 0.0001 MADS AGL51 AGAMOUS-like 51 (.1) AT5G27944 42 / 0.0001 MADS MADS-box transcription factor family protein (.1) AT5G40220 42 / 0.0001 MADS AGL43 AGAMOUS-like 43 (.1) AT5G41200 42 / 0.0002 MADS AGL75 AGAMOUS-like 75 (.1) AT5G39750 42 / 0.0002 MADS AGL81, EMB3008 EMBRYO DEFECTIVE 3008, AGAMOUS-like 81 (.1) AT5G40120 42 / 0.0003 MADS AGL76 AGAMOUS-like 76 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G020300 [exp] 100 / 2e-25 AT3G18650 75 / 3e-15 AGAMOUS-like 103 (.1) Potri.010G238900 [exp] 84 / 1e-19 AT3G18650 66 / 1e-12 AGAMOUS-like 103 (.1) Potri.004G222200 [exp] 44 / 3e-05 AT5G41200 65 / 5e-12 AGAMOUS-like 75 (.1) Potri.007G120002 [exp] 38 / 0.001 AT1G77980 97 / 1e-25 AGAMOUS-like 66 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037166 [exp] 40 / 0.0007 AT2G03060 282 / 2e-92 AGAMOUS-like 30 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.010G181300.1 pacid=42797846 polypeptide=Potri.010G181300.1.p locus=Potri.010G181300 ID=Potri.010G181300.1.v4.1 annot-version=v4.1 ATGACACCAGTTACCGTAAACAAAGGGCAGGAGAAATCCTACAAGAAGAGACAAACCACGATAGAGAAGAAAGCAACAGAGCTCGCAATTTTGTGCGATG TTCCTGTTTGTGTTGTTATTAAAAACAATACTGACGGCAGGGTTTCAACTGTGCCACAAGATAGAGGACAGGCGGTCGATATTCTCTTCTCTTACAAACG CAAACTACAAGCAGAATTAGTGACGGGTAATGCGAAGTCCAAGGTAGTGAAACAGGATGAAACCTGGGACCCAAGTTTTAATAACTTACCTGAGGAAAAT TTGATGGAGTTTATGAAGGAATTGGAAGAGAAGTCAAAGATGGTGGATGAAGCAATTAAGAGAAAACAGGAGGTTGCTAGTAAGAAGGGGAGAGGAAAAA GACTTCATGCTGGTGATGGGTCGACAGAAGTCGGCAATAAAAAGGCAAAGGGCAATATTGTTCTTGATTCGAGAACGACCAATTCTTCGTTTTCTACAGA TTCTGGTTTAGATTCTTCTGGTTCTAGCACCAGCAGCAATACTGGTTTTTCTGATGGAGTTTCAATTCCAAGGAGATTAACTGGTGGCACGTTTGCGGGT GAGATTGACAATGATACCGATATCGAAGCTTTACCTGCATCCACAGTGCGGCCTGTAAAGCTGTTTGGGATTTTTCTCAATTGA
AA sequence Show only first row Show all	>Potri.010G181300.1 pacid=42797846 polypeptide=Potri.010G181300.1.p locus=Potri.010G181300 ID=Potri.010G181300.1.v4.1 annot-version=v4.1 MTPVTVNKGQEKSYKKRQTTIEKKATELAILCDVPVCVVIKNNTDGRVSTVPQDRGQAVDILFSYKRKLQAELVTGNAKSKVVKQDETWDPSFNNLPEEN LMEFMKELEEKSKMVDEAIKRKQEVASKKGRGKRLHAGDGSTEVGNKKAKGNIVLDSRTTNSSFSTDSGLDSSGSSTSSNTGFSDGVSIPRRLTGGTFAG EIDNDTDIEALPASTVRPVKLFGIFLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18650	MADS	AGL103	AGAMOUS-like 103 (.1)		Potri.010G181300 [exp]	0	1
AT1G71800		CSTF64	cleavage stimulating factor 64...		Potri.002G061200 [exp]	2.00	0.8825
AT5G63280	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.015G090300 [exp]	2.82	0.8688
AT2G10950			BSD domain-containing protein ...		Potri.006G065200 [exp]	4.00	0.8491
AT3G23880			F-box and associated interacti...		Potri.008G199800 [exp]	5.29	0.8814
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.014G197200 [exp]	5.47	0.8710
AT2G31600			unknown protein		Potri.017G035200 [exp]	6.00	0.8817
AT1G54150			E3 Ubiquitin ligase family pro...		Potri.003G065500 [exp]	9.48	0.8477
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G087950 [exp]	10.24	0.8695
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	12.32	0.8460
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	13.03	0.8274	Pt-MPI7.1

Compare expression of checked genes

Potri.010G181300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.