Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03300 1548 / 0 ATDCL2, DCL2 dicer-like 2 (.1.2.3) AT5G20320 638 / 0 DCL4, ATDCL4 dicer-like 4 (.1.2) AT1G01040 369 / 8e-105 SIN1, EMB76, EMB60, CAF, ASU1, SUS1, DCL1, ATDCL1 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) AT3G43920 313 / 4e-87 DCL3, ATDCL3 dicer-like 3 (.1.2.3) AT4G15417 125 / 2e-31 ATRTL1 RNAse II-like 1 (.1) AT3G20420 103 / 4e-23 RTL2, ATRTL2 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) AT5G45150 105 / 2e-22 RTL3 RNAse THREE-like protein 3 (.1) AT1G35530 68 / 5e-11 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G62190 48 / 5e-05 PRH75 DEAD box RNA helicase (PRH75) (.1) AT3G22330 48 / 6e-05 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075900 [exp] 2285 / 0 AT3G03300 1567 / 0.0 dicer-like 2 (.1.2.3) Potri.006G188800 [exp] 699 / 0 AT5G20320 1733 / 0.0 dicer-like 4 (.1.2) Potri.018G047500 [exp] 679 / 0 AT3G43920 1518 / 0.0 dicer-like 3 (.1.2.3) Potri.002G181400 [exp] 378 / 7e-108 AT1G01040 2835 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Potri.002G226700 [exp] 130 / 4e-33 AT4G15417 244 / 1e-80 RNAse II-like 1 (.1) Potri.011G086700 [exp] 109 / 2e-25 AT3G20420 356 / 9e-122 RNASEIII-LIKE 2, RNAse THREE-like protein 2 (.1) Potri.013G109600 [exp] 60 / 1e-08 AT1G35530 1234 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G110200 [exp] 50 / 7e-06 AT1G35530 0 / 1 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.016G023100 [exp] 48 / 6e-05 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036447 [exp] 1514 / 0 AT3G03300 1405 / 0.0 dicer-like 2 (.1.2.3) Lus10016367 [exp] 659 / 0 AT3G43920 1457 / 0.0 dicer-like 3 (.1.2.3) Lus10019757 [exp] 606 / 0 AT3G43920 1379 / 0.0 dicer-like 3 (.1.2.3) Lus10019588 [exp] 488 / 7e-151 AT5G20320 1152 / 0.0 dicer-like 4 (.1.2) Lus10030176 [exp] 369 / 4e-109 AT1G01040 972 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005142 [exp] 360 / 6e-103 AT1G01040 2012 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10030177 [exp] 324 / 8e-96 AT1G01040 1138 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10005141 [exp] 178 / 6e-49 AT1G01040 569 / 0.0 SHORT INTEGUMENTS 1, EMBRYO DEFECTIVE 76, EMBRYO DEFECTIVE 60, CARPEL FACTORY, ABNORMAL SUSPENSOR 1, dicer-like 1 (.1.2) Lus10019587 [exp] 170 / 2e-44 AT5G20320 556 / 0.0 dicer-like 4 (.1.2) Lus10040013 [exp] 124 / 3e-30 AT5G20320 318 / 6e-98 dicer-like 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0539 [poplar] [flax] RNase_III PF00636 [poplar] [flax] Ribonuclease_3 Ribonuclease III domain CL0638 [poplar] [flax] PAZ PF02170 [poplar] [flax] PAZ PAZ domain
Representative CDS sequence Show only first row Show all	>Potri.010G181400.5 pacid=42798360 polypeptide=Potri.010G181400.5.p locus=Potri.010G181400 ID=Potri.010G181400.5.v4.1 annot-version=v4.1 ATGATGGAGCCTGTTAGCGTGGATATAGACACAACCCAACAGCTCCCTGCTGATCCTCTCCCATTTGCTAGAAGTTATCAATTGGAGGCTTTGGAGCAGG CGCTAAAGCAGAACACAATTGTCTTTTTGGAGACTGGTTCTGGCAAGACTTTGATTGCCACCATGCTACTGCGCAGTTACGCCCATCTTCTTCGCAAGCC TTCACGTTTTATTGCTGTTTTCCTGGTTCCTGAAGTTTTCCTGGTTCGCCAACAAGCTGGAGTTGTGAGAATGCATACCGACTTGAATGTGGGCATGTAC TGGGGAGACATGGGAATTGACTTCTCGCATGCTGCTACATGGAAGCAGGAAATAGACAAACATGAGGTGCTTGTTATGACACATCAAATTTTGCTGAACG GCTTGAGGCAGGGCTATTTCAAGCTAGACTTCATAAAGGTGTTGATATTTGATGAATGTCATCATGCCAGGGGCAATCACCCTTATGCATGCATCATGAC GGAGTTCTTTCATCGTGAGTTAAGGTCTGGTCACCATGATCTTCCTAGGATTTTTGGGATGACAGCTTCTCTCATAAAGTCAAAGGGTGCAAACTCAGAA TCATACTACAGGCAGCAGATTTGTGAACTGGAGAATATTATGAATTCAAAGGTATACACCTGTGCTAGTGAGACTGTGCTTGCCGAATTTATACCATCCC CAGCCGCAGAATTCTTATTTTATGAGCCCATGAAGATCCCTGATGGTATATATGCTTGCTTGGAAGAAGAATTGGGGAATTTAAAGGCAAAGCATGAATT ATTGCTCAAGCAATTGGATCTCAGTGAGTCTGCTGCAGAATCTGTACACAGTAAAATATCAAAAGTACATTCAGCTTTGATGTTTTGTTCAGGGGAACTT GGTGTTTGGTTGGCTTTTCAGGCTGCACGGTTCTTATCACACAGTGACACTGATAGTGACTTTATTGCATGGGGTAAAGTAGACGTGTCTGGTGAGACAA TTGTTAAGAAGTTTTGCTGGGATGCCTCTTTGGTGATTTCTAATTGCTTTTCAGCTGAATGCTGTATTGGTGATAACACTGAGGCTGATGTGGGCGCGGG GCTTATAACTGCAAAAGTTCTCTGCCTTATTAAGACACTTCTTCAGTACAGGGATTTAAAGGACATAAGATGTATAGTTTTTGTGGAAAGGGTCATTACT GCCGTTGTCCTTGAATCTCTATTGAGGGAGTTGCTTCCTAAACATAGCAGCTGGAAGACTAAATACATAGCAGGAAATAATTCAGGGTTGCAATCCCAGA CACGCCAAATGCAAAATGAAATTGTGGAAGAATTTCGTAAAGGCATGGTGAACATCATTGTTGCAACATCAATCCTTGAGGAAGGATTAGATGTACAAAG TTGCAACTTGGTGATTAGATTTGATCCTCCATCCTCAGTCAGCAGTTTCATACAGTCCCGAGGTCGTGCTAGGATGCAGAATTCAGACTACTTATTAATG GTGAAAACAGAGGATTCGACCACACATTCTCGACTAGAGAACTATCTTTCTAGCAGTGAAATAATGAGAAGGGAGTCCCTGCGCCGCTCTTCCACTTCTT GTTCAGCTCCGCAGAGTGAACTGTATGAAGATGAGTTCTATAGTGTTGAAGGCACAGGGGCAGTTGTAACTCTTAGTTCAAGCGTTAGTTTGATTTACTT TTACTGCTCACGTCTTCCTTCTGATGGGTATTTTAAACCAGCTCCTATATGTATTATAGACAAGGAGAAGGAGACTTGCACACTACATCTTCCAAAAAGC TCTCCTATACAAAATATTTGTGTGCAGGGAAATAATAAAAATCTGAAGCAGAAGGCATGTCTTGAAGCTTGCAAGCAACTCCATTTAATTGGTGCTTTAA CAGACAATCTTGTTCCTGATGTTGTTGAGGAAGAAGCTGTTGCTCAAGAAATTAGGAATGAACGGTATGACGATGAACAACCCATTTATTTGCCACCTGA GCTGGCCAGTCAAGGTCCACGGAACTTGAAGACAAAGTACTACTGCTACTTAATTGAATTAAATCAGAAATTTGATTATGGTGTTCCTGTCCATGATATT GTGCTTGTCATGAGGACTGAGCTTGAATCTGATGTCTTAAGTAGCATGGGTTTTGAATTAGAAGCTGAGAGGGGATTATTGGCAGTGAGCTTGAGGTATA TTGGAGATATTTATCTTGATCAAGTGCCGGTTCTCTTATGTAGGAGGTTTCAGATTACGCTTTTCGAAGTTCTTATACATCGTGAAGTGAACAAATTGGA AGAGGTCTTAAAAGGATTGGAGTTAGGGACAGGTGTTGTGATGGACTATTTTCTACTTCCAGCTATCAGGTCACGCTCGCAACCTTCCATTGACTGGGAA CCTATTAGTTCTGTCCTGTTTTCATATAAAAACGAGGACCACTTCAACTGTTCTTCGAAGGGCAATGCCCATGTTGTCCATACCAAAGGTGGTCCAGTTT GCACATGTGTGCTTCAGAATTCCTTGGTCTGCACCCCCCACAATGGTAATGTCTATTTCATCACGGGTGCTTCTGAGGATTTGAATGGAAGGTCGCTTTT AAAGCTGAGGAATGGAAGTGCAATCACTTACAAGGAGCACTTTGCAAAGCGCAGGAATAGCATCCAATTGCTTTTTGATCAAGAACCATTACTTGAAGGG AGACATATTTTTCCAGTGCACAATTTTCTTAACAGATGCAGAACAAAAAAGGAGAAAGAATCGAAGAATGCACATGTAGATTTGCCTCCTGAACTTTGTG ACATAATTTTATCTCCAGTATCAATCAGCACTCTTTATTCTTATACATTTATCCCATCAATAATGCATCGACTAGAGTCCCTACTTATTGCTGTCAACTT AAAGAAGATGCATTCGGATCATTGCATGCAAAATGTTGATATTCCAGCCATGAAGGTATTGGAAGCAATTACCACAAAGAAGTGCCAAGAGAAATTTCAT TTGGAATCCTTAGAAACTCTCGGAGATTCTTTTCTTAAATATGCTGCAAGCCAGCAGCTATTTAAACTTTATCAAAATCATCATGAGGGCCTTCTTAGTA TGAAGAAGGAAAAAATTATTTCTAATGCTGCACTCTGTAGGCGTGGATGTGACCACAAACTTCCGGGGTTTATCCGCAATGAATCTTTTGATCCAAAACT CTGGATGATTCCTGGTGACAAGTGTGGAAGCGATTTGTTAAGTGAGGAGCCACTTTCTGAGTGCAGAAAAATTTACGTCAGGGGAAGAAGAAAGGTAAAA AGTAAGACAGTTGCTGATGTTGTCGAGGCACTCATTGGGGCATACCTTAGTACAGGTGGTGAAGTACTGGCCTTATTTTTCATGGATTGGATTGGTATAA AGGTGGATTTCATGATTGTACCGTACGAGAGGCACTTCCAATTGCAGGCAGAGAAGTTTGTTAATGTTCGCTACTTAGAGTCACTGTTAAACTATTCATT TCGTGACCCTTCTCTGTTAGTAGAGGCATTGACCCATGGTTCTTACATGCTTCCTGAGATCCCAAGTTGTTATCAGCGACTGGAATTTCTTGGAGACGCT GTGCTAGATTATCTCATCACGATGCATTTGTACAAGGAATATCCCGGGATGTCACCAGGACTGTTAACTGACCTGAGGTCTGCTTCTGTAAACAATGACT GTTATGCACAATCAGCTGTTAAGGGGGACTTGCACAAACACATTCTTCATACCTCACAAGACCTTCACAAGCATATAGTCGAAACTGCTGAAATTTTTCA GAAATCTTCTTTAGGATCAACATTCGGATGGGAATCTGAGACATCTTTCCCCAAGGTACTTGGAGATGTTATAGAGTCTCTAGCAGGGGCTATTCTTGTA GATTCAGGATACAACAAGGAGATAGTCTTTCAAAGTATAAGACCACTTTTGGAGCCTTTAATTACGCCTGCGACAGTAAGACTCCATCCTGCAAGAGAAT TGAGCGAATTATGTCAAAAGCAACATTTTGATTACAAGAAATCCGTTGTTTCCTACAACGGCAGGAATGCTTCCATTACAATAGTGGTTGGGGCTAATGG TGTGACATTCAAACACACAGCCACAGCTGCAGATAAGAAGACAGCCAAAAAATTAGCTTCTAAAGAAGTCTTGAAGTCCCTGAAGGAAAGTAATTTTGCG TCTAGTAGTACCCCAAGCAAACTTGATTAA
AA sequence Show only first row Show all	>Potri.010G181400.5 pacid=42798360 polypeptide=Potri.010G181400.5.p locus=Potri.010G181400 ID=Potri.010G181400.5.v4.1 annot-version=v4.1 MMEPVSVDIDTTQQLPADPLPFARSYQLEALEQALKQNTIVFLETGSGKTLIATMLLRSYAHLLRKPSRFIAVFLVPEVFLVRQQAGVVRMHTDLNVGMY WGDMGIDFSHAATWKQEIDKHEVLVMTHQILLNGLRQGYFKLDFIKVLIFDECHHARGNHPYACIMTEFFHRELRSGHHDLPRIFGMTASLIKSKGANSE SYYRQQICELENIMNSKVYTCASETVLAEFIPSPAAEFLFYEPMKIPDGIYACLEEELGNLKAKHELLLKQLDLSESAAESVHSKISKVHSALMFCSGEL GVWLAFQAARFLSHSDTDSDFIAWGKVDVSGETIVKKFCWDASLVISNCFSAECCIGDNTEADVGAGLITAKVLCLIKTLLQYRDLKDIRCIVFVERVIT AVVLESLLRELLPKHSSWKTKYIAGNNSGLQSQTRQMQNEIVEEFRKGMVNIIVATSILEEGLDVQSCNLVIRFDPPSSVSSFIQSRGRARMQNSDYLLM VKTEDSTTHSRLENYLSSSEIMRRESLRRSSTSCSAPQSELYEDEFYSVEGTGAVVTLSSSVSLIYFYCSRLPSDGYFKPAPICIIDKEKETCTLHLPKS SPIQNICVQGNNKNLKQKACLEACKQLHLIGALTDNLVPDVVEEEAVAQEIRNERYDDEQPIYLPPELASQGPRNLKTKYYCYLIELNQKFDYGVPVHDI VLVMRTELESDVLSSMGFELEAERGLLAVSLRYIGDIYLDQVPVLLCRRFQITLFEVLIHREVNKLEEVLKGLELGTGVVMDYFLLPAIRSRSQPSIDWE PISSVLFSYKNEDHFNCSSKGNAHVVHTKGGPVCTCVLQNSLVCTPHNGNVYFITGASEDLNGRSLLKLRNGSAITYKEHFAKRRNSIQLLFDQEPLLEG RHIFPVHNFLNRCRTKKEKESKNAHVDLPPELCDIILSPVSISTLYSYTFIPSIMHRLESLLIAVNLKKMHSDHCMQNVDIPAMKVLEAITTKKCQEKFH LESLETLGDSFLKYAASQQLFKLYQNHHEGLLSMKKEKIISNAALCRRGCDHKLPGFIRNESFDPKLWMIPGDKCGSDLLSEEPLSECRKIYVRGRRKVK SKTVADVVEALIGAYLSTGGEVLALFFMDWIGIKVDFMIVPYERHFQLQAEKFVNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLGDA VLDYLITMHLYKEYPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKHIVETAEIFQKSSLGSTFGWESETSFPKVLGDVIESLAGAILV DSGYNKEIVFQSIRPLLEPLITPATVRLHPARELSELCQKQHFDYKKSVVSYNGRNASITIVVGANGVTFKHTATAADKKTAKKLASKEVLKSLKESNFA SSSTPSKLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03300		ATDCL2, DCL2	dicer-like 2 (.1.2.3)		Potri.010G181400 [exp]	0	1
					Potri.017G035401 [exp]	1.00	0.8678
AT1G06060			LisH and RanBPM domains contai...		Potri.005G233000 [exp]	4.00	0.8148
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.008G140700 [exp]	7.93	0.8128
AT5G38895			RING/U-box superfamily protein...		Potri.001G068700 [exp]	8.36	0.7413
AT2G21840			Cysteine/Histidine-rich C1 dom...		Potri.019G020100 [exp]	8.94	0.8083
AT3G26320		CYP71B36	"cytochrome P450, family 71, s...		Potri.010G049200 [exp]	9.00	0.8098
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024200 [exp]	9.94	0.8059
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126151 [exp]	14.83	0.7864
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	14.96	0.8046
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.013G060000 [exp]	16.00	0.7705

Compare expression of checked genes

Potri.010G181400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.