Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ASNAP.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56190 365 / 7e-128 ASNAP, ALPHA-SNAP2 alpha-soluble NSF attachment protein 2 (.1.2) AT3G56450 231 / 9e-74 ALPHA-SNAP1 alpha-soluble NSF attachment protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075400 [exp] 506 / 0 AT3G56190 360 / 6e-126 alpha-soluble NSF attachment protein 2 (.1.2) Potri.016G129900 [exp] 361 / 4e-126 AT3G56190 359 / 2e-125 alpha-soluble NSF attachment protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002410 [exp] 446 / 7e-160 AT3G56190 428 / 1e-152 alpha-soluble NSF attachment protein 2 (.1.2) Lus10032835 [exp] 425 / 1e-150 AT3G56190 385 / 6e-135 alpha-soluble NSF attachment protein 2 (.1.2) Lus10001258 [exp] 338 / 5e-117 AT3G56190 360 / 7e-126 alpha-soluble NSF attachment protein 2 (.1.2) Lus10012211 [exp] 334 / 5e-107 AT3G08840 1101 / 0.0 D-alanine--D-alanine ligase family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF14938 [poplar] [flax] SNAP Soluble NSF attachment protein, SNAP
Representative CDS sequence Show only first row Show all	>Potri.010G181900.1 pacid=42798685 polypeptide=Potri.010G181900.1.p locus=Potri.010G181900 ID=Potri.010G181900.1.v4.1 annot-version=v4.1 ATGGATTTGGTAGCGAAAGGAGACGATCTCGAGAAGAAAGCAGAAAAGAAATTGAACGGTTGGGGTATTTTCGGTTCCAAATATGAAGACGCCGCCGATC TCTTCGACAAAGCTGCCAACAATTTCAAGCTCGCTAAATCCTGGGAAAAAGCTGGATCAACGTATGTCAAGCTGGCACAGTGTCATTTGAAGTTGGATAG CAAACATGAAGCTGCCTCAGCATATGTTGATGCTGCTCATTGTTATAAGAAAACATCCACTAGTGAGGCAATTTCATGCTTAGTTCAGGCTGTAGACATG TTCTGTGATATAGGAAGGATCAGTATGGCTGCAAGATATCTAAAGGAAGTTGCTGAGTTGTATGAGTCGGATGCAAATATTGAGAAATCTATGGAATTTT ATCATAAGGCCGCTGATTTCTTCCAAAATGAAGACGTAACAACTTCTGCCAACCAATGCAACCAGAAAGTGGCAGAATTTGCTGCTCAGCTAGAACAATA CCAGACTTCAATTGACATTTATGAAGAGATAGCCCGGCAATCGCTTAAAAATAATTTACTGAAATATGGAGTCAAAGGTCATCTTCTTAATGCTGGCATT TGCCATCTCTGCAAAGGCGATGTTGTTGCAATTACCAATGCATTGGAGCGCTATCAGGAAATGGATCCAACTTTTTCAGGAACTCGTGAATATAAATTGC TAGCGGATATTGCTGCTGCCATTGATGAGGAAGATGTTGCAAAGTTCACTGATGTTATCAAGGAATTTGATAGCATGACACCACTGGATTCCTGGAAGAC GACCCTTCTATTGAGGGTGAAAGAGAAGCTGAAAGCTAAAGAACTAGAGGAGGATGACCTCACCTAA
AA sequence Show only first row Show all	>Potri.010G181900.1 pacid=42798685 polypeptide=Potri.010G181900.1.p locus=Potri.010G181900 ID=Potri.010G181900.1.v4.1 annot-version=v4.1 MDLVAKGDDLEKKAEKKLNGWGIFGSKYEDAADLFDKAANNFKLAKSWEKAGSTYVKLAQCHLKLDSKHEAASAYVDAAHCYKKTSTSEAISCLVQAVDM FCDIGRISMAARYLKEVAELYESDANIEKSMEFYHKAADFFQNEDVTTSANQCNQKVAEFAAQLEQYQTSIDIYEEIARQSLKNNLLKYGVKGHLLNAGI CHLCKGDVVAITNALERYQEMDPTFSGTREYKLLADIAAAIDEEDVAKFTDVIKEFDSMTPLDSWKTTLLLRVKEKLKAKELEEDDLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56190		ASNAP, ALPHA-SN...	alpha-soluble NSF attachment p...		Potri.010G181900 [exp]	0	1	ASNAP.3
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Potri.010G175000 [exp]	1.73	0.8985
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	4.12	0.9091
AT4G29340		PRF4	profilin 4 (.1)		Potri.003G047700 [exp]	4.24	0.8888	Pt-PRO1.2
AT2G44620		MTACP1, MTACP-1	mitochondrial acyl carrier pro...		Potri.014G044000 [exp]	6.48	0.9091
AT5G08160		ATPK3	serine/threonine protein kinas...		Potri.012G057300 [exp]	7.34	0.8865
AT1G77710			unknown protein		Potri.005G173800 [exp]	7.48	0.8602
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.003G128600 [exp]	8.94	0.8838
AT1G12310			Calcium-binding EF-hand family...		Potri.001G117900 [exp]	11.40	0.8965
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Potri.010G222000 [exp]	11.66	0.8985	VMA10.2
AT3G56930			DHHC-type zinc finger family p...		Potri.016G025100 [exp]	11.83	0.8334

Compare expression of checked genes

Potri.010G181900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.