Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10980 670 / 0 SAG20, WI12, ATWI-12 PLAC8 family protein (.1) AT5G05350 630 / 0 PLAC8 family protein (.1) AT1G11380 45 / 6e-05 PLAC8 family protein (.1) AT2G40935 44 / 6e-05 PLAC8 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G075300 [exp] 817 / 0 AT3G10980 595 / 0.0 PLAC8 family protein (.1) Potri.016G129700 [exp] 679 / 0 AT3G10980 619 / 0.0 PLAC8 family protein (.1) Potri.004G026700 [exp] 56 / 3e-08 AT1G11380 253 / 8e-85 PLAC8 family protein (.1) Potri.011G040100 [exp] 55 / 3e-08 AT1G11380 280 / 5e-95 PLAC8 family protein (.1) Potri.006G024900 [exp] 44 / 0.0001 AT2G40935 261 / 6e-90 PLAC8 family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017417 [exp] 709 / 0 AT3G10980 624 / 0.0 PLAC8 family protein (.1) Lus10010219 [exp] 682 / 0 AT3G10980 598 / 0.0 PLAC8 family protein (.1) Lus10012212 [exp] 596 / 0 AT3G10980 592 / 0.0 PLAC8 family protein (.1) Lus10001260 [exp] 586 / 0 AT5G05350 584 / 0.0 PLAC8 family protein (.1) Lus10018410 [exp] 62 / 1e-10 AT1G11380 270 / 1e-91 PLAC8 family protein (.1) Lus10002586 [exp] 61 / 5e-10 AT1G11380 273 / 1e-92 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family PF11204 [poplar] [flax] DUF2985 Protein of unknown function (DUF2985)
Representative CDS sequence Show only first row Show all	>Potri.010G182100.3 pacid=42797118 polypeptide=Potri.010G182100.3.p locus=Potri.010G182100 ID=Potri.010G182100.3.v4.1 annot-version=v4.1 ATGGCTTCAGTTGATAACGGGAACCCCAAAGATGAAATTGAGGAATGTAATGGTACTAAGGCCGGGGGTCAAATTCCTCTTCAGATTTCAGCATCTAGAA GGACACTATTAAGCAATGAAAACTCACAGAGGAAGTCCCAAGACAGCTTAATCTCCCTTCCCAGTGGAATAAATTTTCTCAAATTTGGTTCTGCATCTGC CAAATTCAGACAGTTAGCGCAGGAAAGAGACGAGTTTTCACGTTCAGTGACTTCTTCAAGTAGCCACGGTTTTCGAGAACGTATCAATGGGGTTTTTGCA CGAAAGATTGATTGGGCTTTGCTCATGAAAATGGGCAAAGAATGGATCTGGGACCCAATGAACATGGCCCTTTTTGTGTGGATCATCTGCGTTGCTATCT CCGGCGCAATTTTGTTCCTAGTCATGACCGGGATGTTGGACCATGCACTACCAAAGAAGTCCCAGAGAGATGTATGGTTTGAAGTCAATAATCAAATTCT AAATGCACTATTTACCCTCATGTGTCTGTATCAACATCCAAAGCGATTTTATCACCTTGTGCTTCTCTGTAGATGGAATCCAAAAGACATCTCTAGACTC AGAAAGATTTACTGCAAGAATGGGACTTATAAGCCCCATGAGTGGGCACATATGATGGTGGTTGTGGCTCTACTCCATCTTAACTGCTTTGCTCAATATG CACTTTGTGGTCTAAATTTAGGATATAGGAGATCAGGGAGACCAGCCTTAGGAGTTGGTGTATGCATTTCTGTTGCAATAGCTGCACCTGCAATTGCTGG TGTATACTCCATTCTTAGCCCTCTTGGGAAGGATTATGAGTCTGAAATAGATGAGGAAGCACAGGTGCAGATTACCACTGGTGAAGGGCCAGAGAAGTTG AGGTCAAAATCATTAGCAAAGAGATATTCATTTGCAGTCAGAGATGAACAAAGAATTGCTGAGACTAGACCACAGTGGAGTGGAGGGATACTTGATTTTT GGGATGACATTTCTTTAGCGTATCTATCACTTTTCTGCTCTTTTTGTGTCTTTGGGTGGAACATGGAGAGACTCGGATTTGGGAACATGTATGTTCACAT TTTAACTTTTCTCCTCTTTTGCCTGGCTCCTTTCTGGATTTTCAACTTGGCTGCTGTTAATATTGATAACGAGACTGTCAGGGAAGTGTTAGGTATAACT GGAATTATTCTCTGTGCATTTGGATTACTGTACGGTGGCTTTTGGAGGATTCAAATGAGAAAGAGATTCAATTTGCCAGCTTACACATTTTGTTTCGGTG AACCGGCAGTTTCTGATTGCACTTTGTGGCTATGCTGTTGCTGGTGCTCTCTTGCTCAGGAAGTCCGAACTGGGAATTCTTACGATATTGTGGAAGATAA ATTATGTCAGAAGGAAATGGACAGTAGTAACCAGATGCCACAGTCACCTTTCTCCGGCAAAGATGGTTCAAACCCAAGTTCTCCACTTGGCAACAACTCT AGCCCATCCAGTGATGTGATAACTAATTCTCCAAGTCCAAGCATAATTTCAAAGGGGCACGTGACTCCTGGTAAGCACCTTCCTATGGTGAAAGAAGAGC CTTCCAGAGGAGGTAAGGATGAGACTATGACTCCTCCTGCTCCATCATTGATAGAAAGAGAAGCCAATTAG
AA sequence Show only first row Show all	>Potri.010G182100.3 pacid=42797118 polypeptide=Potri.010G182100.3.p locus=Potri.010G182100 ID=Potri.010G182100.3.v4.1 annot-version=v4.1 MASVDNGNPKDEIEECNGTKAGGQIPLQISASRRTLLSNENSQRKSQDSLISLPSGINFLKFGSASAKFRQLAQERDEFSRSVTSSSSHGFRERINGVFA RKIDWALLMKMGKEWIWDPMNMALFVWIICVAISGAILFLVMTGMLDHALPKKSQRDVWFEVNNQILNALFTLMCLYQHPKRFYHLVLLCRWNPKDISRL RKIYCKNGTYKPHEWAHMMVVVALLHLNCFAQYALCGLNLGYRRSGRPALGVGVCISVAIAAPAIAGVYSILSPLGKDYESEIDEEAQVQITTGEGPEKL RSKSLAKRYSFAVRDEQRIAETRPQWSGGILDFWDDISLAYLSLFCSFCVFGWNMERLGFGNMYVHILTFLLFCLAPFWIFNLAAVNIDNETVREVLGIT GIILCAFGLLYGGFWRIQMRKRFNLPAYTFCFGEPAVSDCTLWLCCCWCSLAQEVRTGNSYDIVEDKLCQKEMDSSNQMPQSPFSGKDGSNPSSPLGNNS SPSSDVITNSPSPSIISKGHVTPGKHLPMVKEEPSRGGKDETMTPPAPSLIEREAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Potri.010G182100 [exp]	0	1
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Potri.004G123300 [exp]	4.89	0.6424
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	9.94	0.5942
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Potri.004G174600 [exp]	10.09	0.6442
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	11.66	0.6147
AT1G75388		CPuORF5	conserved peptide upstream ope...		Potri.005G231250 [exp]	12.12	0.5991
AT2G43410		FPA	RNA binding (.1.2.3.4)		Potri.007G131100 [exp]	18.76	0.5873
AT2G30350			Excinuclease ABC, C subunit, N...		Potri.019G127600 [exp]	21.49	0.5169
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Potri.001G204200 [exp]	27.56	0.5387	Pt-ETR1.1,ETR3
AT1G51610			Cation efflux family protein (...		Potri.010G251300 [exp]	27.71	0.5576
AT5G10750			Protein of unknown function (D...		Potri.018G014234 [exp]	40.14	0.4912

Compare expression of checked genes

Potri.010G182100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.