Plant FIBer expression Database

Potri.010G182500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40410 477 / 1e-170 Staphylococcal nuclease homologue (.1.2)
AT3G56170 431 / 1e-152 CAN Ca-2+ dependent nuclease, Ca-2+ dependent nuclease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G074800
[exp]
578 / 0 AT2G40410 478 / 4e-171 Staphylococcal nuclease homologue (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040967
[exp]
513 / 0 AT2G40410 484 / 2e-173 Staphylococcal nuclease homologue (.1.2)
Lus10041146
[exp]
142 / 8e-41 AT2G40410 125 / 7e-35 Staphylococcal nuclease homologue (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0049 Tudor PF00565 SNase Staphylococcal nuclease homologue
Representative CDS sequence
>Potri.010G182500.1 pacid=42797954 polypeptide=Potri.010G182500.1.p locus=Potri.010G182500 ID=Potri.010G182500.1.v4.1 annot-version=v4.1
ATGGGAAATGCCTTGAGGTTCCTCTATGGGCATTGCTGCAAACCAACAACAGCTGGGGACTCTGATTCATTGGGACCCGACGGTGTATCAGCCGCAACAG
TTGGTGTTTCGGCTCTTTCCCTTGATTTGTTTCACTTTGAAATCACCTCCCAAGTCCCAGAAGGACTTGATAAGCATGTGGTCTCGTCCAAGAAGGCTCA
AGCTAATTGGTTTAGAAAGTTGTTGGAGGCATGGAAAGAAGCAAAACCCCCACCAGAAACACCCGAAGAAGTTGCTAGGCTTGTTATTCAGACCTTGAAG
AGACACCAGAAGGCAGATGTTGAGGGTTTATTGGCTTTCTACGGTCTCCAACTTCCGCATACTCTTGCTCAAGTTTCTGCTGGGGGACCAACATCATTGC
CTCAAGGGGTCAAGTTCGAGATGCAAACTTTACCAGTGGATCCAAAAGCTGTAGCTGATGGAGATACCATAACAGTTTATGTTAGCACGACCGACACCAG
GGAGTCATCTTCTGTTCCAGGGGAAGTTCATATGGCCGCTGTTCAAAGATCAAAAGCTCGTGCGGAGAGGAACTATGGGAAGGCAGATGCACTTCAAAAA
AAAATTGTTGAAGCAGGATATCGGGTGATTAATGTTCAAAATGAGGAGATTCTTGCTCGAAAGTATCGCATTCGATTAAGGGGCATAGATGCACCTGAGA
GTTCAATGCCATACGGGAAAGAGGCGAAAGAGGAGCTAGCTAATCTTGTTCAGGGCAAGTGTTTGAGAGTCTTTGTCTATGGAGAAGATCGTTATCGCCG
CTGTGTAGGTGATATATATTGCAATGGAATGTTTGTACAGGAAGTAATGCTCAAGAAGGGTCTTGCATGGCATTATACTGCATATGATAAACGCCGGGAA
CTAGAAACATGGGAAAAGGAGGCTCGAGCAAAGCGTGTAGGGTTATGGGCTTCATCAAACCCTGAGATGCCATGGGAATGGAGAAAGGACAGACGTGAAG
GCAGATAG
AA sequence
>Potri.010G182500.1 pacid=42797954 polypeptide=Potri.010G182500.1.p locus=Potri.010G182500 ID=Potri.010G182500.1.v4.1 annot-version=v4.1
MGNALRFLYGHCCKPTTAGDSDSLGPDGVSAATVGVSALSLDLFHFEITSQVPEGLDKHVVSSKKAQANWFRKLLEAWKEAKPPPETPEEVARLVIQTLK
RHQKADVEGLLAFYGLQLPHTLAQVSAGGPTSLPQGVKFEMQTLPVDPKAVADGDTITVYVSTTDTRESSSVPGEVHMAAVQRSKARAERNYGKADALQK
KIVEAGYRVINVQNEEILARKYRIRLRGIDAPESSMPYGKEAKEELANLVQGKCLRVFVYGEDRYRRCVGDIYCNGMFVQEVMLKKGLAWHYTAYDKRRE
LETWEKEARAKRVGLWASSNPEMPWEWRKDRREGR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40410 Staphylococcal nuclease homolo... Potri.010G182500
[exp]
0 1
AT4G21410 CRK29 cysteine-rich RLK (RECEPTOR-li... Potri.004G026350
[exp]
1.00 0.7701
AT3G26610 Pectin lyase-like superfamily ... Potri.010G044001
[exp]
3.16 0.7160
AT1G69940 ATPPME1 Pectin lyase-like superfamily ... Potri.006G137100
[exp]
7.41 0.7441
Potri.012G129400
[exp]
8.12 0.7150
AT3G18670 Ankyrin repeat family protein ... Potri.011G016300
[exp]
9.16 0.7380
AT5G27350 SFP1 Major facilitator superfamily ... Potri.001G226600
[exp]
10.00 0.6589
AT1G55790 Domain of unknown function (DU... Potri.001G438100
[exp]
12.72 0.7600
AT3G18670 Ankyrin repeat family protein ... Potri.011G015750
[exp]
13.56 0.7480
AT5G54980 Uncharacterised protein family... Potri.008G052451
[exp]
18.13 0.7340
AT3G18670 Ankyrin repeat family protein ... Potri.006G281600
[exp]
18.97 0.7212

Potri.010G182500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.