Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49690 468 / 1e-162 UDP-Glycosyltransferase superfamily protein (.1) AT2G22590 460 / 2e-159 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 453 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 242 / 7e-75 UDP-Glycosyltransferase superfamily protein (.1) AT1G64910 236 / 2e-72 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 235 / 5e-72 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT5G54010 233 / 3e-71 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 232 / 6e-71 UDP-Glycosyltransferase superfamily protein (.1) AT1G64920 230 / 3e-70 UDP-Glycosyltransferase superfamily protein (.1) AT1G50580 227 / 5e-69 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030600 [exp] 508 / 3e-178 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.012G034100 [exp] 504 / 9e-177 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 476 / 6e-169 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 457 / 2e-158 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 404 / 1e-137 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 404 / 8e-137 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 379 / 1e-127 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 258 / 8e-81 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 250 / 9e-78 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025711 [exp] 428 / 6e-147 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 426 / 9e-146 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 414 / 3e-141 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10012726 [exp] 409 / 2e-139 AT2G22590 471 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 297 / 7e-98 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 246 / 4e-76 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 236 / 2e-72 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 228 / 8e-69 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 224 / 2e-67 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10040178 [exp] 216 / 3e-64 AT5G54010 437 / 7e-151 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.010G182575.1 pacid=42797264 polypeptide=Potri.010G182575.1.p locus=Potri.010G182575 ID=Potri.010G182575.1.v4.1 annot-version=v4.1 ATGGATGAACCTCACGAGCTCCACATAGCCATGTTCCCATGGCTTGCTTTCGGTCATATAATCCCATTTCTAGAGCTCGCCAAGCTAATAGCTCAAAGGG GTCACAAAATCTCCTTTATATCTACTCCACGAAACATCCAGCGTTTACCAACTATACCTCCAAATTTAACACCACGAATCAATTTAGTGAGCCTCGCTTT ACCCCATGTAGAAAATCTCCCAAACAACGCAGAGGCCACCGCAGACTTGCCTTTCGACAAAATTCCATACCTTAAGATAGCCTATGACAGACTCCAAGAT TCTTTATTTCACTTCTTACATTCTTCTTCTCCAGATTGGATCATCTTTGATTTCGCTTCCTACTGGTTACCTGAGATAGCAACCAAGCTTGGGATCTCTG GTGTTCTCTTTAGCATTTTTGGTGCATGGACCCTATCCTTCGCTGGACCATCATACTCAGCAATACTCAACGGCGACGATCCAAGGACCGAACCGCAGCA CTTCACGGTCCCTCCAAAGTGGGTCACATTTCCCTCTAAAGTGGCATTTCGCATCCATGAAGCTAAGCGGTTTTTGGTTCAAATAGAAGCGAACAGTTCA GGTGTCACTGATATATTTCGTTGGGGATCCGTGCTTGCTGGCTGTGATGTTATAGCCGTAAGGAGCTGCTTAGAGCTAGAGGCTGATTTCTTAAGACTTG TGGAAGACCTTCACTGTAAGCCTGTAATCCCAGTAGGCCTACTGCCACCACCTGCTCAGTGTAGCGAGGGCGGGGTGGATGAAAAATGGGTTACGATCAG TGAGTGGCTAGACAAGCAAACCCAAGGATCTGTGGTTTACATAGCGTTCGGAAGCGAGTTAACAATAAATCAAGATGAAATAACTGAATTGGCTCTGGGG TTAGAGTTATCGGGTCTGCCGTTCTTTTGGGCTTTGAGGAACCAGGATGACTCGGTCAGGTTACCAGATGGATTTGATGAACGAGTAAAAGGACGTGGAG TGGTGTGGACGAGCTGGGCACCACAACTAAGGATTATGGCTCATGAATCGGTTGGGGGTTTTTTGACTCACTGCGGTTATAGCTCAGTTATAGAGGCACT CTCCTTTGGACTTGCTTTGATCATGTTGCCTTTCGCTATAGACCAAGGATTAATCGCAAGGGTTTTTGAAGGGAAGAAGGTTGGGATAGAAGTGCCGAGA GATGAGCAGGACGGGTCGTTTACGAGGAACTCGGTAGCTGAGTCACTCAGGTTGGTTATTGTTGACAAGGAAGGATCCGCATATAGAGAAAACGCCAAGC AGCAGATGGTAACATTATTTGGTGATAAGAGTATCAGCGATCGATGCATGGACCAATTTGTTGCCTTCCTACGAAGTCATAGAAAATTGCCAGCAGTGAT TAACAATGACCTGCCCACGCACTCGCCAAACTGA
AA sequence Show only first row Show all	>Potri.010G182575.1 pacid=42797264 polypeptide=Potri.010G182575.1.p locus=Potri.010G182575 ID=Potri.010G182575.1.v4.1 annot-version=v4.1 MDEPHELHIAMFPWLAFGHIIPFLELAKLIAQRGHKISFISTPRNIQRLPTIPPNLTPRINLVSLALPHVENLPNNAEATADLPFDKIPYLKIAYDRLQD SLFHFLHSSSPDWIIFDFASYWLPEIATKLGISGVLFSIFGAWTLSFAGPSYSAILNGDDPRTEPQHFTVPPKWVTFPSKVAFRIHEAKRFLVQIEANSS GVTDIFRWGSVLAGCDVIAVRSCLELEADFLRLVEDLHCKPVIPVGLLPPPAQCSEGGVDEKWVTISEWLDKQTQGSVVYIAFGSELTINQDEITELALG LELSGLPFFWALRNQDDSVRLPDGFDERVKGRGVVWTSWAPQLRIMAHESVGGFLTHCGYSSVIEALSFGLALIMLPFAIDQGLIARVFEGKKVGIEVPR DEQDGSFTRNSVAESLRLVIVDKEGSAYRENAKQQMVTLFGDKSISDRCMDQFVAFLRSHRKLPAVINNDLPTHSPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49690			UDP-Glycosyltransferase superf...		Potri.010G182575 [exp]	0	1
AT4G28320		MAN5, AtMAN5	endo-beta-mannase 5, Glycosyl ...		Potri.006G009400 [exp]	3.60	0.7895
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.004G108200 [exp]	10.29	0.7884
AT1G67400			ELMO/CED-12 family protein (.1...		Potri.010G060700 [exp]	12.00	0.7740
AT5G62220		ATGT18	glycosyltransferase 18 (.1)		Potri.012G130700 [exp]	13.41	0.6668
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	15.09	0.7858	Pt-TAN1.2
AT5G66600			Protein of unknown function, D...		Potri.005G130000 [exp]	17.32	0.7612
AT1G45688			unknown protein		Potri.001G183600 [exp]	18.73	0.7248
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G062000 [exp]	22.22	0.7196
AT1G54200			unknown protein		Potri.018G049900 [exp]	34.87	0.6990
AT3G06150			unknown protein		Potri.008G202400 [exp]	34.98	0.6779

Compare expression of checked genes

Potri.010G182575 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.