Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30240 56 / 1e-10 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT1G08140 53 / 1e-09 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G06970 52 / 2e-09 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT1G08150 52 / 3e-09 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT1G08135 51 / 5e-09 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT2G28170 50 / 1e-08 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT1G05580 47 / 3e-07 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT5G22910 46 / 4e-07 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT3G44930 45 / 8e-07 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT3G44900 45 / 1e-06 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 84 / 2e-20 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G171200 [exp] 79 / 1e-18 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 77 / 8e-18 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 49 / 6e-08 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.016G127800 [exp] 46 / 4e-07 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.018G098300 [exp] 46 / 6e-07 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.013G153200 [exp] 44 / 2e-06 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G183000 [exp] 44 / 2e-06 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G111400 [exp] 40 / 4e-05 AT1G05580 645 / 0.0 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040961 [exp] 64 / 2e-13 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040963 [exp] 56 / 1e-10 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10013423 [exp] 55 / 5e-10 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021415 [exp] 53 / 8e-10 AT2G28180 127 / 2e-34 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) Lus10016152 [exp] 52 / 4e-09 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000161 [exp] 49 / 4e-08 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10016153 [exp] 48 / 1e-07 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 46 / 4e-07 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021413 [exp] 44 / 3e-06 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10037374 [exp] 44 / 3e-06 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G182751.1 pacid=42799264 polypeptide=Potri.010G182751.1.p locus=Potri.010G182751 ID=Potri.010G182751.1.v4.1 annot-version=v4.1 ATGTTAGAACAGGCATACAGGGCCACTCATATCAACTTTATAGATGTGACTGTAAGAGATGGATCCGATACATCTGCTATAGTTCAATCAATTGTGGGAG AGTACGATCTTATCATGGTAGGTCGTTGCCATGAAAACGAAACAAAAGTTCTACCAGGCCTATCAGAACGTATTCATTCCCGAGAGCTTGGGCCGTTGGG GGGTATGCTTGCTTCTGAAAATATAGAGTACTTTCAATTAATGTACTGTTTGAGCCCAAGCTGTCCCTAG
AA sequence Show only first row Show all	>Potri.010G182751.1 pacid=42799264 polypeptide=Potri.010G182751.1.p locus=Potri.010G182751 ID=Potri.010G182751.1.v4.1 annot-version=v4.1 MLEQAYRATHINFIDVTVRDGSDTSAIVQSIVGEYDLIMVGRCHENETKVLPGLSERIHSRELGPLGGMLASENIEYFQLMYCLSPSCP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30240		ATCHX13	CATION/H+ EXCHANGER 13, Cation...		Potri.010G182751 [exp]	0	1
AT1G66920			Protein kinase superfamily pro...		Potri.007G125100 [exp]	2.00	0.7342
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	14.14	0.7093
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	32.44	0.6934
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.002G111400 [exp]	37.12	0.6772
					Potri.019G016702 [exp]	43.47	0.6864
AT3G14680		CYP72A14	"cytochrome P450, family 72, s...		Potri.011G101750 [exp]	62.57	0.6555
AT5G28680		ANX2	ANXUR2, Malectin/receptor-like...		Potri.005G055200 [exp]	72.66	0.6676
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G166300 [exp]	74.22	0.6710
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.010G237700 [exp]	85.41	0.6390
AT1G66920			Protein kinase superfamily pro...		Potri.007G126200 [exp]	88.90	0.6648

Compare expression of checked genes

Potri.010G182751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.