Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 362 / 2e-113 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 359 / 6e-112 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G13620 343 / 4e-106 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G08140 343 / 6e-106 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G08150 324 / 8e-99 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44930 313 / 4e-95 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT3G44910 310 / 5e-94 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT5G22910 310 / 1e-93 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT1G08135 303 / 2e-91 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT1G06970 302 / 1e-90 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G171200 [exp] 872 / 0 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 867 / 0 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.018G098300 [exp] 403 / 3e-129 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 390 / 2e-124 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G183000 [exp] 353 / 5e-110 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 342 / 2e-105 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 333 / 5e-102 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 327 / 2e-100 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 323 / 4e-99 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013423 [exp] 707 / 0 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 699 / 0 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000161 [exp] 625 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040961 [exp] 491 / 6e-168 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000154 [exp] 376 / 2e-124 AT5G22900 216 / 2e-63 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10030013 [exp] 346 / 8e-107 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 347 / 1e-106 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10037374 [exp] 335 / 3e-103 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 335 / 4e-103 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10043128 [exp] 317 / 4e-96 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.010G182900.1 pacid=42799202 polypeptide=Potri.010G182900.1.p locus=Potri.010G182900 ID=Potri.010G182900.1.v4.1 annot-version=v4.1 ATGTGGAACGTAAAACATGGGGAAAGTATTCTTCAGCATTCATTGGTTCGTTTCCATGTTCAATTGATTGTGATTTTCCTTCTTGTGAACTCTTTTCACT TGGTGCTCCAACGATTCCATTTTACCCATTTCACCTCCGAGATCCTGGCAGGTATAGTATTGGGACAAACTGTATGGAGAGACAATGACAAATCAGAGCG CTTGTTCCCTACAGTAGTGCGCAATCAAGTCTTTGCTTCATTATCAAAGATTGGTTACATTCTGTTCTCGTTCTTGATTGGTGTGAGAATGGAACCAAGT TTGATATGGAAAACAGGAAGAACTGCCACTTTTTTAGCGACTCTGCTGTTCATATTCCATCACATAGCAATGCTAAGCATCGACATCACGTTTGACAAAG ATAAGGAGAAGTTAACTGCGGGATTCGTGCTTGCAAAAGAAGCATTTTCAGCTATATATTTTGCATCGATAACCACTACCGAATTTGTTATGGTCAGTAC CATTTTAATGCAGCTTAAGATAATAAATTCGCAGCTTGGACACCTTGCTCTAGCATCCTCATTGTTATTCAAATTGGCAACCTTTGCAGTAGGAACTTTG TTTGGTTTCATAAATGCTTTTGTAAATATATCGTCTCAAGTGGGAGCTCGGATCGTTATTTATTCTCTTGCACTTATCGTGTTTACTGTAGTCGTGTCGA GGAAAACAATGCTCTTCTTCATTAGAAGCACACCAGTAGGTAAGCCTACGAAGGAAATCTACACCACTATGACTGTAGGCGTACTATTTTTATTGTCAGC AATTGGTGACGAAGTAGGACTGCATTATATGTATGGCCCTTTAATACTTGGCCTGGCAGTGCCTGCACGGTCTCCTTTAGCTGAAGTCCTAGTAGCAAAG TTCGATACATTGGTTTCAGGATTTTTTCTACCACTCATGGCGGTGTTCTGTTCCTCCAAACTCAATTTATTTCAGTTTATCCACGAGTTTAAGGATGCTG TTCATCTCCAGATTTCATTGATTGGATATGTGATGAAGCTGCTGGTAACTTTTATCGGGGCGTATTTTTGCAAGATACCTTTAAGACATGCTATTGCCCT CACAATCATCTTGAATGCCAAAGGCATTACTGAAATTGCACAATTTTTAAGCTTCGGTGACATTACGGTACATGAACTAGACGCAGCCTCTGGAATTTTC TTAGTATTTCTGTTACAAGCATTTCAGCCACTCCTTATTAAAAAGCTTTACAATCCTGCAGACCAATACATTGGGTACCAGAATAAATCCATTGAGAAGG CTTCTGATGATGCGGAGCTCCAGATACTTGCCTGTGCACATAGGCAAGAGGATGCTGTTGCGGCAATCAAGCTCTTACAGTATTCCAATCCTACAAAACA AAGTCCCTTGTCCGTTTATGTACTTTGCCTGGAGGAACTCGTTAGCAGTTCCACCCCTCTCCTAATCAATCACCAATTAGGCCAAAAAATGTCCTCTTAC AGGGTATCCCGCTCACAACCAATCATTGATATCTTCAAGTATTTTGAGTCACAGTACAAGAAGTTCGTCCGGGTGAATATGTTCACTGCCGTATCGCCAC TAAAACAGATGCATGAGGACATTTGTTGGCTCTCTTTTGACAAGGCTTGCTCCCTAATAATACTTCCATTTCATAAGAAATGGAATAGCAAAGGCAAATT GGTTTCCAGCAACACTGATACAAGGAACTTGAATATTACTGTACTGGAAAGGGCACCTTGTTCTGTTGGCATCCTCATTGATCGTAGTAGAACCCAGGGC TTGTCTTCTATCTTCCTTGCGTCAACATATCGTGTGGCTGCACTGTTCTTTGAAGGCCCAGATGATAGGGAGGCAGTTGCTTATGCCTTAAGGATGGCAG GAAGATTTGGACTTCATTTAACAGTTAAGCGTTTTATCACCCCTACTACTGAGCAAGTCTATCATGATTGGGATTACATGCTTAACAGTGAATTTTTGAG AAACTTGAAACTTGGAGTGTCAGAAAGTAGTAGTATCAATTACATAGAGGAGACTGTGAGAGATGGAGCTGACACATCATCCATAATAAAGTCAATGGTG GGAGGTTATGACCTTATCATGGCAGGGCGGCGCCATCAAACTGAGCCACAAGCTTTTTCAGGTCTATCAGAATGGATGGATTTGCAAGAGCTTGGGCCGA TAGGGGACCTGCTTGCTTCTGAGGATATTACTAGTGCAATTTCAGTTTTGGTGGTTCAACAGCAGATCATGAAAGCAAGTCACAGCAGTACTTTGAATTA A
AA sequence Show only first row Show all	>Potri.010G182900.1 pacid=42799202 polypeptide=Potri.010G182900.1.p locus=Potri.010G182900 ID=Potri.010G182900.1.v4.1 annot-version=v4.1 MWNVKHGESILQHSLVRFHVQLIVIFLLVNSFHLVLQRFHFTHFTSEILAGIVLGQTVWRDNDKSERLFPTVVRNQVFASLSKIGYILFSFLIGVRMEPS LIWKTGRTATFLATLLFIFHHIAMLSIDITFDKDKEKLTAGFVLAKEAFSAIYFASITTTEFVMVSTILMQLKIINSQLGHLALASSLLFKLATFAVGTL FGFINAFVNISSQVGARIVIYSLALIVFTVVVSRKTMLFFIRSTPVGKPTKEIYTTMTVGVLFLLSAIGDEVGLHYMYGPLILGLAVPARSPLAEVLVAK FDTLVSGFFLPLMAVFCSSKLNLFQFIHEFKDAVHLQISLIGYVMKLLVTFIGAYFCKIPLRHAIALTIILNAKGITEIAQFLSFGDITVHELDAASGIF LVFLLQAFQPLLIKKLYNPADQYIGYQNKSIEKASDDAELQILACAHRQEDAVAAIKLLQYSNPTKQSPLSVYVLCLEELVSSSTPLLINHQLGQKMSSY RVSRSQPIIDIFKYFESQYKKFVRVNMFTAVSPLKQMHEDICWLSFDKACSLIILPFHKKWNSKGKLVSSNTDTRNLNITVLERAPCSVGILIDRSRTQG LSSIFLASTYRVAALFFEGPDDREAVAYALRMAGRFGLHLTVKRFITPTTEQVYHDWDYMLNSEFLRNLKLGVSESSSINYIEETVRDGADTSSIIKSMV GGYDLIMAGRRHQTEPQAFSGLSEWMDLQELGPIGDLLASEDITSAISVLVVQQQIMKASHSSTLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Potri.010G182900 [exp]	0	1
AT4G08025			Protein of unknown function (D...		Potri.004G110300 [exp]	5.65	0.5722
AT5G21050			unknown protein		Potri.004G195900 [exp]	6.32	0.5722
					Potri.014G065250 [exp]	6.92	0.5722
					Potri.004G208200 [exp]	9.89	0.5625
					Potri.008G113301 [exp]	15.00	0.5539
AT4G22300		SOBER1	SUPPRESSOR OF AVRBST-ELICITED ...		Potri.004G001701 [exp]	25.09	0.5211
					Potri.001G054301 [exp]	28.98	0.4932
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Potri.009G091950 [exp]	31.36	0.4978
AT1G43760			DNAse I-like superfamily prote...		Potri.012G064001 [exp]	50.19	0.4253
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	64.57	0.5301

Compare expression of checked genes

Potri.010G182900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.