Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13620 474 / 9e-156 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 435 / 2e-140 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT3G17630 389 / 2e-123 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT2G30240 379 / 3e-119 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1) AT5G41610 370 / 7e-116 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT5G22900 349 / 5e-108 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT1G05580 342 / 6e-105 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G44900 336 / 5e-103 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT4G23700 324 / 2e-98 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G44930 314 / 5e-95 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105200 [exp] 505 / 1e-167 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 446 / 6e-145 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 416 / 3e-134 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 389 / 1e-123 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.013G142301 [exp] 389 / 2e-123 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.001G096320 [exp] 389 / 4e-123 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G153200 [exp] 380 / 1e-119 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G134900 [exp] 369 / 2e-115 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.006G176400 [exp] 367 / 4e-115 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030013 [exp] 469 / 2e-153 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 468 / 2e-152 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10026408 [exp] 383 / 1e-120 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10041344 [exp] 362 / 3e-113 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10017540 [exp] 362 / 2e-112 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10032332 [exp] 361 / 2e-112 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10043128 [exp] 356 / 1e-110 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10037374 [exp] 347 / 2e-107 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10016153 [exp] 340 / 1e-104 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 336 / 1e-102 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.010G183000.1 pacid=42797501 polypeptide=Potri.010G183000.1.p locus=Potri.010G183000 ID=Potri.010G183000.1.v4.1 annot-version=v4.1 ATGGCAGAAAATGCGACTCATGACCTGTTTTGCCACGCTATCAATTCATTGAATGACTTTGCTATCTGGCGCAATTTCACCGCGAAGATTGTTGATGGCT CTCCCGCTCTTTTCATGTTTCAGATGACAATTATTTCCCTGGTATCAAACTTGTTGGAAATCTTTCTCAGGCCTCTTGGACAACCGAGTTGCGTTTCCCA GATATTAGCTGGTATGATATTTGGTCCTTCACTCCTCGGGCAAAACAAGAAGTTGCTAGATACCATGTTCCCTATAAGAAGTTTGGCAACGCTGTGGACA GCGGCATCATTTGGAAATTTATTCTATACCTTTCTAATTGCAGTGAAGGCAGATCCTGCAATGATGCTAAAGCCAGGTCGAGCTGCTATGTATATAGGCT CTTCTATGTTCTGCATCGCTTTGTTTCTTTCCCTTGCACTATCATTCTTATTGAAAACCATTGTCACCATGGAAGCTAATCTCAATAAATCGATTGTCTT CATAGCTGCATCACAGTCATTTACAGGTTTTCCAGTCGTTGCTGCCTTCCTAACTGAGCTCAAGATCCAGAACACAGATGTTGGCCGCCTAGCCTTTGCT TCAGCAGTATTTGCTGATTTAATTGATATTGTTGTGGCCGCAATTTCGCTCACGCTTGGGGATGTCGTTTCTCACCCACTAGCGCCAGTGCGGGCAGTCC TATCAAACATTGCATTTGTTATTGTTATCGTGTTCATCATCAAGCCAATGGTAATGTGGATGATGGGTCCTATAAAAGAAATGAAACTTGTGAGTGAGAA ATGCATTTTTATCACCACCGTTGTCACTCTACTCCTCGCATTTGTGAGCGAGATCGTCGGCCAGCATTACGTCCTTGGGCCATTGATTTTTGGCTTGGTT TTACCGATCGGACCACCTTTTGGAGCAACTTTGGTATCGAAGCTAAGTACTTTAGTTTGCGGTCTCCTCTATCCCGCTTACCTTGCTGTTACTGGTCTGC AGACCAATATCTTCAAAGTTGATTTTCAGTCTGCAATTATTGTGGGGATAGTTATGGTCTCTGGTATCATAATTAAGTTGGGAGCAGTCATTTTGCCAGC CTTGCATTCTCAGGTGCCCGTTCGAGATGCTTTTCTGCTGGCAATCATTTTGAATATAAAGGGGATTGTGGAAATCAACGTTTACAACTTCTGGAAAGAT AACAAGACTTTACATGATGGCGATTACGCTTTGTGCGTAGTTTCGGTGATTTTAACAAATGTAGTTGTTGGCCCATTGGTGAAACTACTCTATAATCCTT CAAGGCAATACAATACTTTGAAAAGAAGCACCATCCAACATTGCAGGCGAGATTCAGAATTTCGGATGCTGGTCTGCATCCACAACCGTGAGAATGTCCC TGCAATCATAAACCTTCTAGAAATATCACACGCTACGGAAGAGAGCCCTATAGCAGTCATTGGCTTGGTGCTCGTCAAGATTGAGGGACGAGCTGCCCCA ATCCTAATAGAAAACAGCCGGAAAGGAGTCCCGGAGACAGAATCATCCAGTACAACCAGCATCCTCAATGCCTTAAGGAACTATGAGCAAAATCATCGGA ACTCCTCCACCGTCCAATCATTCACCTCAATCACGCATTTTGAAACAATGCATGATGATATTTGTCGTCTGGCAATGAACAAGAGAGCCACTATTGTAAT CATGCCGTTTCATAAGAAATGGGCCATCGATGGCTCCATCGAATCTACAAACCGTTCTATCCAACAAATGAACCTCAATGTCCTCAAAAACGCTCCATGT TCTGTTGGAATTCTCGTTGACCGTGGAATCTTAAACGGGTCATTGTCTGTTCTGAATGGTAGGTTGTTGTTCAATGTTGCTGTTCTATTCTTTGGCGGCC CAGATGACGCGGAGTCACTAGCTTATGGAGCTCGCATGGTGAGACATGGATGTGTAAAGATAACAGTCGTGAACTTTCTTCTCTTTGGAAATGCAAACAG TAAAGAAAGGAAGCGAGACAGCGATTTAATCAATGAATATCGACAAGGTAACTTGGGAAATCAGCAATTTTTGTATTTCGAAGAAGTGGTAAGAGATGGG GTAGAGCTCGCTGGATGTCTGGCAAAGATGGTGGGTTGTTTTGATTTAGTTTTAGTGGGGAAATATCATCAGAAGTCTCCTCTTTTTAGAGGCCTTGAAG AGTGGAGTGAGTGCCCTGAGCTAGGGGTCATTGGCGATATGCTTGCTTCACCAGATTTTGAGTGCACTGCATCAGTCTTAGTCGTTCAGCAGCCAAGAAT GAGAGTGAACGAAACGGAGCCGCTTATTCATGAAGCTCCAGATTATAACAGAGTATGCCTTTCGATGGAGAGAAGGAATCAGAGAATATTTTAG
AA sequence Show only first row Show all	>Potri.010G183000.1 pacid=42797501 polypeptide=Potri.010G183000.1.p locus=Potri.010G183000 ID=Potri.010G183000.1.v4.1 annot-version=v4.1 MAENATHDLFCHAINSLNDFAIWRNFTAKIVDGSPALFMFQMTIISLVSNLLEIFLRPLGQPSCVSQILAGMIFGPSLLGQNKKLLDTMFPIRSLATLWT AASFGNLFYTFLIAVKADPAMMLKPGRAAMYIGSSMFCIALFLSLALSFLLKTIVTMEANLNKSIVFIAASQSFTGFPVVAAFLTELKIQNTDVGRLAFA SAVFADLIDIVVAAISLTLGDVVSHPLAPVRAVLSNIAFVIVIVFIIKPMVMWMMGPIKEMKLVSEKCIFITTVVTLLLAFVSEIVGQHYVLGPLIFGLV LPIGPPFGATLVSKLSTLVCGLLYPAYLAVTGLQTNIFKVDFQSAIIVGIVMVSGIIIKLGAVILPALHSQVPVRDAFLLAIILNIKGIVEINVYNFWKD NKTLHDGDYALCVVSVILTNVVVGPLVKLLYNPSRQYNTLKRSTIQHCRRDSEFRMLVCIHNRENVPAIINLLEISHATEESPIAVIGLVLVKIEGRAAP ILIENSRKGVPETESSSTTSILNALRNYEQNHRNSSTVQSFTSITHFETMHDDICRLAMNKRATIVIMPFHKKWAIDGSIESTNRSIQQMNLNVLKNAPC SVGILVDRGILNGSLSVLNGRLLFNVAVLFFGGPDDAESLAYGARMVRHGCVKITVVNFLLFGNANSKERKRDSDLINEYRQGNLGNQQFLYFEEVVRDG VELAGCLAKMVGCFDLVLVGKYHQKSPLFRGLEEWSECPELGVIGDMLASPDFECTASVLVVQQPRMRVNETEPLIHEAPDYNRVCLSMERRNQRIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Potri.010G183000 [exp]	0	1
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.003G036200 [exp]	4.79	0.9180
AT3G07420		ATNS2, SYNC2_AR...	SYNTHETASE C2, asparaginyl-tRN...		Potri.002G249700 [exp]	8.83	0.9013	Pt-SYNC2.1
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Potri.005G161500 [exp]	12.56	0.8406
AT2G39830		LRD3, DAR2	LATERAL ROOT DEVELOPMENT 3, DA...		Potri.010G197500 [exp]	16.49	0.8873
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.018G006000 [exp]	18.70	0.8890	Pt-VHA1.1
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	19.13	0.8475
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252300 [exp]	19.28	0.8920
AT4G09740		ATGH9B14	glycosyl hydrolase 9B14 (.1)		Potri.001G098800 [exp]	21.21	0.8422
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	23.87	0.8839
AT1G65810			P-loop containing nucleoside t...		Potri.004G077500 [exp]	25.45	0.8728

Compare expression of checked genes

Potri.010G183000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.