Plant FIBer expression Database

Potri.010G183100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G40390 590 / 0 unknown protein
AT5G64190 555 / 0 unknown protein
AT2G15020 175 / 1e-48 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G094100
[exp]
188 / 3e-53 AT2G15020 592 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010225
[exp]
664 / 0 AT2G40390 555 / 0.0 unknown protein
Lus10009844
[exp]
632 / 0 AT2G40390 517 / 0.0 unknown protein
Lus10017423
[exp]
150 / 9e-44 AT2G40390 119 / 7e-33 unknown protein
Lus10026592
[exp]
150 / 2e-39 AT2G15020 518 / 2e-180 unknown protein
Lus10013880
[exp]
147 / 4e-38 AT2G15020 516 / 1e-179 unknown protein
PFAM info
Representative CDS sequence
>Potri.010G183100.1 pacid=42798208 polypeptide=Potri.010G183100.1.p locus=Potri.010G183100 ID=Potri.010G183100.1.v4.1 annot-version=v4.1
ATGGCTTCTTGTTGCTATCCTGATGTTCTTGCTTGGATTCAGAACCTTCCACCAATCACTCGATGGAAAGAAAAAAATCCCCTGTCCATATGCATATGTT
CTTCCGGCTCTTTCCAGCCATCCCTCAATCTTTCTGTGGCCAAAAACCTACAATCTCCAACTATTTCCTTCTCTATCATTGCAGATCTCAATCTCCCTAT
ATCTCTTTGGTCCTCAAAACCAATCAAAACCAACCCCAAATCATTGAAGTTATTAGATGATGAAACAATTTCTAGTCTCTCAATCAATCTTATTGAAGAT
GTCCTTGGTTATGCCTCAAACAAGTCATGTAGCTCCTCCACCAAAGTTCTCAAAACGGATTCGGTACTTTCCCACTTAAAAGATACGTTCAACCTTGCAT
TTCTAACACTCTCACTCCTCATTTGCATCTACGAAGCTCCTGCAGATCTACGCTCTGAATGTCTTGCTAGTCTCAAGAATCAATTGACTGATAGCCAGTT
GCGGGGAGCATCAAAGTCACTCATGAAAATCATGGGATCCAATCTAGAAGAGCAGTGGATGCGGTCCTTAAATCTTGCAATCACAAACTGGATTGCAGAG
CTCCAAGCGTCCCACCACACTCTCAAAACTCCATCACCACTCTTTTCTTACTCATTTTCAACACCGGGATTATGGAAAGTTCAATTATATTGTCCTGTCA
TAGCCATGGATATCGAAAGTTCAAGCAATCCTCCAGCTCACGAGAGGCTTCTTTTCTCCCTGAAATACCACCAACTTGAATGTGTCATCCAGTTTAACTA
CAAAGTCATCGTTCAAGAAAATTGGGTGGATGTGATTGTAAACACGGATAACATAAGGTGTGATGTAGTCCGACTAGTGAATGAAACCCTCATGACTGAA
CAGGGAGCTGGGACTGATGAGAAGCATTTCCCTTCGAGAATATCGTTGCATCTCACTCCAATTCTTCAAACCAACATAATAAGCGTTTCAGTAGGCAAGT
CTTCAGCTAATCCAACAAGAGAGATTGAAATGGAAAAAGGTATAGAAACTTCTTTTGATCCACCAAACAGTTTCTTGGGGCTGAAGGTCTCGGCAGGAGA
GACAGTGTCAATGAGCTTGAAGCCTTGGAAGTTTGAGCAATCTGTTTATGGTACCAGTGCAATAATGAATTGGTTTCTTCATGATAACATGGATGGAAGA
GAGGTTTTCTCGAACAAACCTCCAAGGACGGCATTGATCAAACCCAAGGCATGGTTCAAAAACCGGTACTCAAGCTCTTACCGGCCTTTCACTAGGCAAG
GAGGGGTGATCTTTGCCGGTGATGAGTATGGAAAGAGTGTGCAGTGGAAGGTGGACAAAAGTACCATGGGGAAGACAATGGAATGGGAAATTAAAGGGTG
GATTTGGTTAACGTATTGGCCTAATAAGTATAGAACAGCGTATAGTGAGACTAGGAGACTGCAATTTAAGGAAATTCTTCATCTTAGTATTCCACCATCC
TAA
AA sequence
>Potri.010G183100.1 pacid=42798208 polypeptide=Potri.010G183100.1.p locus=Potri.010G183100 ID=Potri.010G183100.1.v4.1 annot-version=v4.1
MASCCYPDVLAWIQNLPPITRWKEKNPLSICICSSGSFQPSLNLSVAKNLQSPTISFSIIADLNLPISLWSSKPIKTNPKSLKLLDDETISSLSINLIED
VLGYASNKSCSSSTKVLKTDSVLSHLKDTFNLAFLTLSLLICIYEAPADLRSECLASLKNQLTDSQLRGASKSLMKIMGSNLEEQWMRSLNLAITNWIAE
LQASHHTLKTPSPLFSYSFSTPGLWKVQLYCPVIAMDIESSSNPPAHERLLFSLKYHQLECVIQFNYKVIVQENWVDVIVNTDNIRCDVVRLVNETLMTE
QGAGTDEKHFPSRISLHLTPILQTNIISVSVGKSSANPTREIEMEKGIETSFDPPNSFLGLKVSAGETVSMSLKPWKFEQSVYGTSAIMNWFLHDNMDGR
EVFSNKPPRTALIKPKAWFKNRYSSSYRPFTRQGGVIFAGDEYGKSVQWKVDKSTMGKTMEWEIKGWIWLTYWPNKYRTAYSETRRLQFKEILHLSIPPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G40390 unknown protein Potri.010G183100
[exp]
0 1
AT1G59530 bZIP ATBZIP4 basic leucine-zipper 4 (.1) Potri.014G013400
[exp]
1.41 0.8386
AT5G64250 Aldolase-type TIM barrel famil... Potri.017G051800
[exp]
2.00 0.8365
AT5G53980 HD ATHB52 homeobox protein 52 (.1) Potri.001G395100
[exp]
7.48 0.8006
AT5G45160 Root hair defective 3 GTP-bind... Potri.015G112600
[exp]
8.30 0.8372
AT1G73060 LPA3 Low PSII Accumulation 3 (.1) Potri.003G182801
[exp]
9.32 0.7616
AT4G12390 PME1 pectin methylesterase inhibito... Potri.003G113700
[exp]
9.79 0.8016
AT4G23100 ATECS1, CAD2, G... ROOT MERISTEMLESS 1, PHYTOALEX... Potri.003G126900
[exp]
11.61 0.7854
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Potri.005G027800
[exp]
11.83 0.7854
AT5G04500 glycosyltransferase family pro... Potri.008G028900
[exp]
18.13 0.8011
AT3G14460 LRR and NB-ARC domains-contain... Potri.017G121901
[exp]
20.39 0.7856

Potri.010G183100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.