Plant FIBer expression Database

Potri.010G183200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56130 221 / 7e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
AT3G15690 135 / 2e-38 Single hybrid motif superfamily protein (.1.2)
AT1G52670 131 / 1e-36 Single hybrid motif superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G074100
[exp]
400 / 1e-142 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Potri.003G061400
[exp]
126 / 1e-34 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2)
Potri.001G172600
[exp]
124 / 3e-34 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009843
[exp]
266 / 3e-89 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10017424
[exp]
253 / 4e-84 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10010226
[exp]
250 / 3e-83 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10040959
[exp]
237 / 7e-77 AT3G56130 238 / 6e-77 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10011480
[exp]
127 / 2e-35 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1)
Lus10023118
[exp]
124 / 6e-34 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0105 Hybrid PF00364 Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence
>Potri.010G183200.1 pacid=42798514 polypeptide=Potri.010G183200.1.p locus=Potri.010G183200 ID=Potri.010G183200.1.v4.1 annot-version=v4.1
ATGGAATCCTCTCTTCTTCTTCGATCCTTTCAATGTACCCTGCACACTCAAGGTTTGACTGTTGGGAGGAAGCTGATATCGTATCCAGTAAAGAGAGATC
GAAGACTAGTATCCTGTGTTAAAACATCTGAAGCTCCTGCAATAGCCAAGACTGACGATTCCAATAAACAAGGGTCATTGGAGAAGAATTCTCAACGAAA
TGCAACTTTTCCAAATGGATTTGAAGCATTGATACTAGATGTCTGTGACGAGACCGAGGTTGCTGAGCTGAAACTTAAGGTTGGGGACTTTGAAATGCAT
CTGAAGCGGAACATTGGGGTTGCAAAAGCTCCCTTTACATCATCAACACCACTATCACCACCACCTATTCCAACTCCACCAATGGAGTTATCAGCAGCTG
TTTCTCCAGCACCATCGCCATCTAAATCCTCTGTCGAGAAAACCACTCCCTTTACAAATGTCTCCTTCAGGAAGTCATCTAAGTTGGCAGTGTTAGAGGC
TTCTGGAGCTAGTGGATATGTTCTAGTTGCTTCTCCAACTGTTGGCTCATTTCGAAGGAACAGAACGGTGAAAGGAAAGAAGCAGCCGCTTATCTGCAAA
GAGGGTGATGTGATTAAAGAAGGACAAGTGATAGGATATTTGGATCAATTTGGCACTGAACTTCCTGTGAAATCTGATGTGGCGGGAGAAGTATTAAAGC
TCCTCTTCAATGATGGAGATGCAGTTGGTTATGGAGACCCTCTTGTAGCTGTCTTGCCATCATTCCATGCTATCGACAAGTGA
AA sequence
>Potri.010G183200.1 pacid=42798514 polypeptide=Potri.010G183200.1.p locus=Potri.010G183200 ID=Potri.010G183200.1.v4.1 annot-version=v4.1
MESSLLLRSFQCTLHTQGLTVGRKLISYPVKRDRRLVSCVKTSEAPAIAKTDDSNKQGSLEKNSQRNATFPNGFEALILDVCDETEVAELKLKVGDFEMH
LKRNIGVAKAPFTSSTPLSPPPIPTPPMELSAAVSPAPSPSKSSVEKTTPFTNVSFRKSSKLAVLEASGASGYVLVASPTVGSFRRNRTVKGKKQPLICK
EGDVIKEGQVIGYLDQFGTELPVKSDVAGEVLKLLFNDGDAVGYGDPLVAVLPSFHAIDK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56130 biotin/lipoyl attachment domai... Potri.010G183200
[exp]
0 1
AT4G30996 NKS1 NA\(+\)- AND K\(+\)-SENSITIVE ... Potri.006G187800
[exp]
6.63 0.6871
AT1G50430 ST7R, PA, LE, 7... PARVA, LEPIDA, DWARF 5, DELTA5... Potri.010G253200
[exp]
9.64 0.6594 DWF5.2
AT3G09735 S1FA-like DNA-binding protein ... Potri.016G087400
[exp]
22.80 0.6085 Pt-S1FA3.2
AT1G66430 pfkB-like carbohydrate kinase ... Potri.004G089300
[exp]
27.03 0.5875
AT5G08750 RING/FYVE/PHD zinc finger supe... Potri.005G070100
[exp]
29.66 0.5837
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.005G137600
[exp]
80.74 0.5152
AT2G21170 PDTPI, TIM PLASTID ISOFORM TRIOSE PHOSPHA... Potri.004G168000
[exp]
80.83 0.5626
AT2G29960 CYP19-4, ATCYP5... CYCLOPHILIN 19-4, ARABIDOPSIS ... Potri.009G046500
[exp]
89.72 0.5541 Pt-CYP5.3
AT5G11730 Core-2/I-branching beta-1,6-N-... Potri.006G233400
[exp]
99.37 0.5414
AT2G06010 ORG4 OBP3-responsive gene 4 (.1) Potri.018G065800
[exp]
124.65 0.5476 ORG4.2

Potri.010G183200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.