Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RHG1.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51740 904 / 0 IMK2 inflorescence meristem receptor-like kinase 2 (.1) AT3G56100 727 / 0 IMK3, MRLK meristematic receptor-like kinase (.1) AT3G08680 292 / 7e-88 Leucine-rich repeat protein kinase family protein (.1.2) AT4G20140 298 / 7e-86 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT3G17840 286 / 1e-85 RLK902 receptor-like kinase 902 (.1) AT4G36180 286 / 5e-82 Leucine-rich receptor-like protein kinase family protein (.1) AT5G05160 276 / 9e-82 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 273 / 3e-80 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G36570 271 / 1e-79 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 267 / 2e-78 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G126300 [exp] 1003 / 0 AT3G51740 1038 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.006G104300 [exp] 983 / 0 AT3G51740 996 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Potri.018G074300 [exp] 332 / 2e-102 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 317 / 3e-97 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 317 / 4e-97 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G117500 [exp] 309 / 1e-91 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 302 / 7e-91 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 300 / 1e-90 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G091000 [exp] 304 / 2e-89 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022679 [exp] 866 / 0 AT3G51740 926 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014236 [exp] 842 / 0 AT3G51740 907 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10014235 [exp] 834 / 0 AT3G51740 933 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10022678 [exp] 833 / 0 AT3G51740 885 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10012225 [exp] 627 / 0 AT3G51740 679 / 0.0 inflorescence meristem receptor-like kinase 2 (.1) Lus10017756 [exp] 321 / 3e-98 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 313 / 2e-95 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 310 / 2e-94 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 308 / 1e-93 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 305 / 2e-92 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G183400.1 pacid=42799205 polypeptide=Potri.010G183400.1.p locus=Potri.010G183400 ID=Potri.010G183400.1.v4.1 annot-version=v4.1 ATGGAGAATCAAAATAAATCACTCAATAGTTTTTACAACTACCCTTTCCAAAATCTAGCCGATTCATGCTGCATGTCCAATAAGAAGAAGGAGAAATGGA AGATTATGTCACAATTACAAAATCCCTTTTCTCTATACACCCACATTTTCTTGCTTCTCCAGCTTCTGCTCATTTCTGCATTTCAACCAGTTTCGAGCCA AGTTTGGGATGGTGTGATTGTCACCCAAGCTGATTTTCAAGCACTGCAAGCCTTCAAGCATGAACTGGTTGATCCAAAAGGCGTCTTGAGAAGCTGGAAT GACAGTGGCTATGGAGCTTGTTCTGGTGGTTGGATTGGAATCAAGTGTGCTCAAGGCCAAGTTATTGTAATCCAGCTTCCTTGGAAAGGACTAGGAGGCA GAATCACTGAGAAAATTGGCCAACTTCAAGAACTAAGAAAGCTTAGCCTCCATGACAATGTCATCGGTGGCTCAATCCCTCAAGAATTGGGATTTCTCCC CAATCTTAGAGGTGTTCAGTTATTCAATAACCGGTTGTCAGGTTCAATCCCACCTTCATTAGGTTCTTGCCCTTTGCTTCAAACTCTAGACCTTAGTAAT AATTTACTCACTGGGTCTATCCCCTTTAGTCTTGCAAACTCTACCAAGCTTTTTAGGCTCAATTTGAGCCACAATTCACTTTCGGGTTTAATCCCAGTTA GTCTCACAAGCTCTTCTTCCCTGATTTTCCTTGATCTTCAATACAATAACCTCTCTGGTGCCATTCCAAACTCTTGGGGTGCAACGCAAAAGAAGAGTAA CTTTCTTCCACTTCAGCACTTATCCCTTAGTCATAACTTCTTTTCTGGAAGTATTCCTGCTTCTTTGGGCAAGCTGAGAGAGCTCCAAGATATTTATGTT AGTCACAACCAAATAAATGGAGCTATACCTGTTGAAATAGGGGGGCTCTCTAGGCTTAGAACACTTGATCTTTCCAATAATGCCATTAATGGAAGCTTGT CTGATAGCCTTTCCAATGTATCCTCTCTTGTTCTGTTGAATCTCGAGAACAATGACCTTGATAACCAAATTCCAGAAGCCATTGGCAGATTGCATAATCT CTCTGTCCTCAACTTGAAGGGAAACCAATTTAGTGGTCACATTCCTGCAACAATAGGAAACATTTCTACACTCACACAACTTGACGTGTCCGAGAATAAG CTCAGTGGAGAAATTCCAGATTCCCTTGCCGACCTAAATAACCTTATTTCATTCAATGTTTCTTACAATAACCTCTCAGGTCCTGTTCCCATTCCTCTAT CTCAAAAGTTCAATTCAAGCTCTTTCGTGGGGAATATTCAACTATGTGGATACAGTGGTACTGCTCCATGTCCTTCCCATGCGCCTTCCCCAAGTGTCCC AGTTCCACCACCAGAGAAACCGAAGAAACATCATCGTAAACTGAGCACAAAAGACATAATTCTCATTGCAGCAGGAGCTCTTCTCGTTGTAATGCTTATA ATTTGCTGCATTTTGCTTTGCTGTTTGATAAGGAAAAGGGCTGCATCAAAATCAAATAATGGTCAAGCCACGACAAGGGCAGCAGCGGCAAGAGGCGAAA AGGGGGTCCCGCCTGCGGCAGGTGAAGTTGAATCTGGTGGAGAAGCTGGAGGGAAACTAGTCCATTTTGATGGACCAATGGTTTTTACAGCTGATGATCT TTTGTGCGCAACTGCTGAAATTATGGGAAAGAGCACTTATGGGACTGTCTATAGGGCCACATTAGAGGATGGGAATCAAGTTGCAGTGAAAAGATTAAGA GAAAAGATCACCAAGGGCCAAAGAGAGTTCGAAAGCGAGGTTAATGTGCTTGGTAAAATCCGGCACCCAAATCTTTTGGCATTAAGGGCATATTATTTGG GACCTAAAGGAGAGAAGCTTCTTGTTTTCGACTACATACCTAAAGGGAGTCTGGCAACATTCCTCCATGCTAGAGGACCTGATACACTAATTGATTGGCC AACAAGAATGAAAATAGCTCAGGGCATGACGCGCGGCCTGTTCTATCTTCACAACAACGAGAATATCATACATGGAAACCTTACATCAAGCAATGTCCTT CTTGATGAGCGCACAAATGCAAAAATCGCAGATTATGGCCTATCTCGGCTAATGACAGCTGCTGCCAGCACTAATGTAATTGCAACTGCAAGTGTATTAG GATATCGAGCACCAGAGCTTTCAAAGCTTAAGAAAGCAAACACAAAAACAGATGTATACAGCCTTGGAGTGATTATTTTGGAACTTCTTACAGGGAAGTC TCCTGGCGAGGCAATGAATGGAGTGGATTTGCCTCAATGGGTTGCCTCTATTGTCAAAGAAGAGTGGACTAACGAAGTTTTTGACTTAGAATTGATGAAA GATGCCTCGATAATCGGTGATGAGTTGCTCAACACATTGAAATTGGCTTTGCATTGTGTTGATCCCTCACCTTCAGCACGACCAGAAGTTCAACTAGTCC TCCAGCAATTGGAAGAGATTAGACCAGAGACAGCTGCAAGTCCCGGACCTTCCGGAGATGACGGTGCAGGAGTTCCTTCAACAAGTGATTAA
AA sequence Show only first row Show all	>Potri.010G183400.1 pacid=42799205 polypeptide=Potri.010G183400.1.p locus=Potri.010G183400 ID=Potri.010G183400.1.v4.1 annot-version=v4.1 MENQNKSLNSFYNYPFQNLADSCCMSNKKKEKWKIMSQLQNPFSLYTHIFLLLQLLLISAFQPVSSQVWDGVIVTQADFQALQAFKHELVDPKGVLRSWN DSGYGACSGGWIGIKCAQGQVIVIQLPWKGLGGRITEKIGQLQELRKLSLHDNVIGGSIPQELGFLPNLRGVQLFNNRLSGSIPPSLGSCPLLQTLDLSN NLLTGSIPFSLANSTKLFRLNLSHNSLSGLIPVSLTSSSSLIFLDLQYNNLSGAIPNSWGATQKKSNFLPLQHLSLSHNFFSGSIPASLGKLRELQDIYV SHNQINGAIPVEIGGLSRLRTLDLSNNAINGSLSDSLSNVSSLVLLNLENNDLDNQIPEAIGRLHNLSVLNLKGNQFSGHIPATIGNISTLTQLDVSENK LSGEIPDSLADLNNLISFNVSYNNLSGPVPIPLSQKFNSSSFVGNIQLCGYSGTAPCPSHAPSPSVPVPPPEKPKKHHRKLSTKDIILIAAGALLVVMLI ICCILLCCLIRKRAASKSNNGQATTRAAAARGEKGVPPAAGEVESGGEAGGKLVHFDGPMVFTADDLLCATAEIMGKSTYGTVYRATLEDGNQVAVKRLR EKITKGQREFESEVNVLGKIRHPNLLALRAYYLGPKGEKLLVFDYIPKGSLATFLHARGPDTLIDWPTRMKIAQGMTRGLFYLHNNENIIHGNLTSSNVL LDERTNAKIADYGLSRLMTAAASTNVIATASVLGYRAPELSKLKKANTKTDVYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDLELMK DASIIGDELLNTLKLALHCVDPSPSARPEVQLVLQQLEEIRPETAASPGPSGDDGAGVPSTSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.010G183400 [exp]	0	1	RHG1.5
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.007G056500 [exp]	11.04	0.8521
AT3G59680			unknown protein		Potri.019G112300 [exp]	22.58	0.8011
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	23.19	0.8277
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.005G174000 [exp]	27.34	0.7619	PtrAUX7
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.008G175500 [exp]	37.20	0.7968
AT2G17620		CYCB2;1	Cyclin B2;1 (.1)		Potri.005G100000 [exp]	38.40	0.8067	Pt-CYCMS1.1
AT1G25510			Eukaryotic aspartyl protease f...		Potri.010G128200 [exp]	39.15	0.7459
AT5G56120			unknown protein		Potri.011G167900 [exp]	57.07	0.7698
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.005G112100 [exp]	58.73	0.7668
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.008G009500 [exp]	77.33	0.7290

Compare expression of checked genes

Potri.010G183400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.