Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20420 177 / 4e-51 CHR42 chromatin remodeling 42 (.1) AT3G42670 169 / 2e-48 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073500 [exp] 352 / 2e-113 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040956 [exp] 210 / 2e-62 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 209 / 4e-62 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G183766.1 pacid=42798540 polypeptide=Potri.010G183766.1.p locus=Potri.010G183766 ID=Potri.010G183766.1.v4.1 annot-version=v4.1 ATGAAGAGAAAGCATTTACATCAGTCCAAGCACCCATATAATGCACACCCTAAATTGTCCGAGCCCCTGAATGTTCAAGCAAAGATGGGATTGTCAAAAA GACAAATTGATGCTTTTGAGGCCTTATACGGCGGCTCTTGGCAAAGCGTGGAGCTCATAGAAATCAGGGATGGGGCTATGACTCTGCATTTTGCCGATAG TCATCATAGAATTGAGGAGAAGGGTCCTTTCTCAAACATTCGAGTGAAGTCGAGGAAGTCAACTTTATCTGATTGCACCTGCTTTCTGAGGCCTGGTATT GATGTTTGTGTGCTTTCATTCTCTGAACGTGCAAAGAGTTCAGAGGAAGGAAATTCAGAACCTGTGTGGGTTGATGCTAGGATAAATTCTATCAAGCGGA AACCTCATGAATCTCAGTGCTCATGCCAATTTTTTGTTAACCTCTATGTCAACCAAGGTCCTCTTGGTTCGGAGAGAGCAACACTCAGTAAAGAAACTGA AGCAGTAGGAATCGACCAAATTTCCATCCTTCAGAAGCTTGACAATGATCCATGTGAAGCAGACAACAATAGACATGAAACTCAGTTCTACCGTTGGGAA TTCTGTGAGGACTGTTCTTTAGTGCAAAGAAGTAAACTCTTTTTGGGAAAAAATTTTAGCTGA
AA sequence Show only first row Show all	>Potri.010G183766.1 pacid=42798540 polypeptide=Potri.010G183766.1.p locus=Potri.010G183766 ID=Potri.010G183766.1.v4.1 annot-version=v4.1 MKRKHLHQSKHPYNAHPKLSEPLNVQAKMGLSKRQIDAFEALYGGSWQSVELIEIRDGAMTLHFADSHHRIEEKGPFSNIRVKSRKSTLSDCTCFLRPGI DVCVLSFSERAKSSEEGNSEPVWVDARINSIKRKPHESQCSCQFFVNLYVNQGPLGSERATLSKETEAVGIDQISILQKLDNDPCEADNNRHETQFYRWE FCEDCSLVQRSKLFLGKNFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183766 [exp]	0	1
					Potri.003G175432 [exp]	2.82	0.8864
AT1G61850			phospholipases;galactolipases ...		Potri.011G000200 [exp]	3.16	0.8698
AT2G39580			unknown protein		Potri.008G052500 [exp]	5.19	0.8617
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Potri.005G129800 [exp]	6.32	0.8794
AT3G48470		EMB2423	embryo defective 2423 (.1)		Potri.015G090700 [exp]	8.48	0.8464
					Potri.019G026101 [exp]	9.21	0.8467
AT1G19250		FMO1	flavin-dependent monooxygenase...		Potri.009G143500 [exp]	10.19	0.8317
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072566 [exp]	10.67	0.8225
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	11.83	0.8591
AT5G38460			ALG6, ALG8 glycosyltransferase...		Potri.017G114100 [exp]	12.72	0.7955

Compare expression of checked genes

Potri.010G183766 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.