Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20420 154 / 7e-42 CHR42 chromatin remodeling 42 (.1) AT3G42670 139 / 7e-37 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT3G24340 47 / 8e-06 CHR40 chromatin remodeling 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073500 [exp] 434 / 8e-143 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.014G050200 [exp] 50 / 2e-06 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040956 [exp] 191 / 1e-54 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 169 / 7e-47 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10040136 [exp] 59 / 2e-09 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10011033 [exp] 50 / 2e-06 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10003003 [exp] 49 / 5e-06 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G183799.1 pacid=42798222 polypeptide=Potri.010G183799.1.p locus=Potri.010G183799 ID=Potri.010G183799.1.v4.1 annot-version=v4.1 ATGGCTAACAGAAAAAAGCACGGAACCCAAATTAGGGAGGTTAAATTGGGTGTGGCTAACAGAATAGAACACCAAGATCAACTTGCTATTGTTCCTGTGC CAACTGAAGATGATCTGGTTACCTTTGAACAATATGATTCCCCTTTGAAGACTCCTGATAATTTTCCACAAGAGTGTATTGAATTTCCAATCCGTTCTTA TAGCAAAAAGGGTTATTCTGTACAAAGGAAGAATGATTTCGATGAAGATATGATGTTTGGAAGTGGATGGGGTGGAAAATCTTCTAGGAAGAAAGTTCAA AGAGCAAGATACCAATCCACACATTTAAAGAGGGATGATTCCTGTAAGCCAAAGACTTACAAGCAGACAGCCTTAAGCGCAGGTGCATACGATAAACTCA TAAGTTTTTATATGAAGAACTTTGATTCCACAATCAAGTCAAAGGAGGTAACGCGCATTATTGACCAGTGGGAGGAGTTTAAAGCCAAACACAGCTCAGA TCAGAAGGAGACAATGGAACCTTCTTTGGTTGAGGATGATGGAGAAAGCTCAGAAACTGAAATGTTGTGGAGAGAAATGGAACTATGCCTGACATCAGCC TATATTTTTGAAGATAATGAATCTCGAGTTTCCACTCAGACCACACAGAACTCGAGTGAATGTTGCCAGCATGAATTCAAACTGGATGAAGAAATTGGGA TATTATGCCATAAATGCAGCTTCGTGAAAACTGAAAAAAAATATGTTTCAGCACCATTTATGGAACGCACAAGCCAGACTGCAGAAAGTAAGCCACGGGA TGAAGAAGATTCGGAGCTCAAGCCTGATGAAGATGAGGGCTTGAATCTTTTTAGCAATCATACTTCAGGTGAAGCGTGCCTTTTGAAGTGA
AA sequence Show only first row Show all	>Potri.010G183799.1 pacid=42798222 polypeptide=Potri.010G183799.1.p locus=Potri.010G183799 ID=Potri.010G183799.1.v4.1 annot-version=v4.1 MANRKKHGTQIREVKLGVANRIEHQDQLAIVPVPTEDDLVTFEQYDSPLKTPDNFPQECIEFPIRSYSKKGYSVQRKNDFDEDMMFGSGWGGKSSRKKVQ RARYQSTHLKRDDSCKPKTYKQTALSAGAYDKLISFYMKNFDSTIKSKEVTRIIDQWEEFKAKHSSDQKETMEPSLVEDDGESSETEMLWREMELCLTSA YIFEDNESRVSTQTTQNSSECCQHEFKLDEEIGILCHKCSFVKTEKKYVSAPFMERTSQTAESKPRDEEDSELKPDEDEGLNLFSNHTSGEACLLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Potri.010G183799 [exp]	0	1
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	3.46	0.9033
					Potri.004G212751 [exp]	6.63	0.8869
					Potri.004G044750 [exp]	8.30	0.8393
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	10.95	0.8504
AT5G12220			las1-like family protein (.1.2...		Potri.001G273600 [exp]	13.85	0.8392
					Potri.019G036280 [exp]	15.00	0.8454
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.011G129500 [exp]	15.29	0.8415
					Potri.012G048550 [exp]	20.44	0.8415
AT3G18930			RING/U-box superfamily protein...		Potri.009G110000 [exp]	24.69	0.8091
					Potri.012G052502 [exp]	24.97	0.8427

Compare expression of checked genes

Potri.010G183799 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.