Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40320 692 / 0 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 576 / 0 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT3G55990 372 / 3e-125 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT5G01620 370 / 3e-125 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT1G73140 367 / 2e-124 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40150 364 / 5e-123 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT5G01360 357 / 3e-120 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT2G38320 347 / 9e-117 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT2G40160 325 / 6e-108 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G12060 250 / 2e-77 TBL1 TRICHOME BIREFRINGENCE-LIKE 1, Plant protein of unknown function (DUF828) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073300 [exp] 781 / 0 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.016G125500 [exp] 376 / 6e-128 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.010G187600 [exp] 377 / 3e-127 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 374 / 6e-127 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.016G125600 [exp] 370 / 4e-125 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.001G376700 [exp] 367 / 2e-124 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 369 / 3e-124 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 354 / 2e-119 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 339 / 4e-113 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009839 [exp] 665 / 0 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 663 / 0 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10017428 [exp] 554 / 0 AT2G40320 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10027813 [exp] 374 / 1e-126 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10028974 [exp] 374 / 2e-126 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007497 [exp] 373 / 5e-126 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 368 / 6e-124 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 365 / 2e-123 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10005042 [exp] 358 / 1e-120 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10007528 [exp] 336 / 4e-114 AT2G40320 357 / 7e-123 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.010G184000.1 pacid=42797949 polypeptide=Potri.010G184000.1.p locus=Potri.010G184000 ID=Potri.010G184000.1.v4.1 annot-version=v4.1 ATGAACATTAAACGCAGTCTTAAATTTTCAAAGATGAAGCAACCTTTCACTGCATCTTCTTCTTCTTCTTCGTCATCATCATCTCTGATCAGAAAGGCCC GTCTCTCTCCTTATCTCCTCACTCTATTGGTTTTCATAGTCTTTGTTGCCATTCTTTATGGCGAGGATTTCATGTGCCTCCTTGGCCAGCTCGACCCCAA CCTTGACCGTCCAGCAACGTCCAGAACCGAGAAGAAGTGGGAGAAGCTACCTTTCTCCACGGGGAGGACCCCAGAAGGTTGTGATTTTTTTAGCGGGAGG TGGGTGTGGGACGATTCAAACCGGCCACTTTATGAAGAATCGGAGTGTCCGTACATACAGCCACAGTTGACATGTCAAGAGCATGGCAGGCCTGAGAAGG ATTATCAACACTGGAGATGGCAACCTCATGGCTGTGATCTTCCCAGTTTTAATGCCACATTGATGCTTGAAACCTTACGAGGAAAAAGAATGATGTTTGT TGGTGATTCTTTGAACCGGGGTCAATATGTTTCCATGGTCTGTCTTCTCCACCGACTTATCCCTGAAGACCAAAAATCCATGGAAACATTCGGTTCTTTA ACGGTCTTCACTGCCAAGGAATACAATGCAACAATTGAGTTCTACTGGGCACCATTTCTCCTTGAATCAAACTCGGATGATGCTGTCATTCATAGAGTAT CAGATAGAATTGTGAGGAGAGGTTCAATCAATAAACATGGGAAAAATTGGAAAGGCGTTGATATTATAGTCTTCAATACTTACCTATGGTGGATGACTGG CCAAGACATAAAAATCTTGCAAGGGTCATTCGAAGATGAAACAAAAGATATCATAGAGCTGTCACCCGAGGATGCGTATCGTATGGCAATGAAAAGCATG CTGAGATGGGTGAGAAAGAATATGAACCGCAAGAAAACAAGGGTCTTTTTCACCAGCATGTCACCTACTCATCAAAAGAGCATAGACTGGGGAGGCGAAC CGGGTCACAGCTGTTACAACGAAACAACTCTAGTTGACAATGCCACATACTGGGGATCGGATTGCAAGAGAAGCATAATGGAAGTAATCGGAGATGAATT TAGCAGATCAAGATTCCCCATCACATTTCTCAACATCACACTACTCTCAAATTACCGCAAAGATGCGCATACCTCGATATACAAGAAGCAATGGAGTCCA TTGACTCCTGAACAAATTGCTAATCCTGTTAGCTATGCAGATTGTGTGCATTGGTGTTTGCCTGGCCTTCAGGATACCTGGAATGAACTCTTATTTGCCA AGCTGTTCTATCCATAG
AA sequence Show only first row Show all	>Potri.010G184000.1 pacid=42797949 polypeptide=Potri.010G184000.1.p locus=Potri.010G184000 ID=Potri.010G184000.1.v4.1 annot-version=v4.1 MNIKRSLKFSKMKQPFTASSSSSSSSSSLIRKARLSPYLLTLLVFIVFVAILYGEDFMCLLGQLDPNLDRPATSRTEKKWEKLPFSTGRTPEGCDFFSGR WVWDDSNRPLYEESECPYIQPQLTCQEHGRPEKDYQHWRWQPHGCDLPSFNATLMLETLRGKRMMFVGDSLNRGQYVSMVCLLHRLIPEDQKSMETFGSL TVFTAKEYNATIEFYWAPFLLESNSDDAVIHRVSDRIVRRGSINKHGKNWKGVDIIVFNTYLWWMTGQDIKILQGSFEDETKDIIELSPEDAYRMAMKSM LRWVRKNMNRKKTRVFFTSMSPTHQKSIDWGGEPGHSCYNETTLVDNATYWGSDCKRSIMEVIGDEFSRSRFPITFLNITLLSNYRKDAHTSIYKKQWSP LTPEQIANPVSYADCVHWCLPGLQDTWNELLFAKLFYP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Potri.010G184000 [exp]	0	1
AT1G19170			Pectin lyase-like superfamily ...		Potri.018G062700 [exp]	1.00	0.9120
AT4G24910			Protein of unknown function (D...		Potri.015G096900 [exp]	2.00	0.9115
AT5G12850	C3HZnF	PEI1	CCCH-type zinc finger protein ...		Potri.001G258400 [exp]	2.82	0.8945
AT2G27930			PLATZ transcription factor fam...		Potri.006G119400 [exp]	5.91	0.8875
AT5G23870			Pectinacetylesterase family pr...		Potri.012G142300 [exp]	6.92	0.8841
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Potri.009G089800 [exp]	6.92	0.8868
AT5G15050			Core-2/I-branching beta-1,6-N-...		Potri.017G075600 [exp]	7.48	0.8859
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Potri.017G039000 [exp]	8.30	0.8951
AT3G57880			Calcium-dependent lipid-bindin...		Potri.006G058900 [exp]	9.16	0.8481
AT3G06035			Glycoprotein membrane precurso...		Potri.008G195000 [exp]	10.48	0.8726

Compare expression of checked genes

Potri.010G184000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.