Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05460 764 / 0 AtENGase85A Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) AT3G11040 739 / 0 AtENGase85B Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) AT3G61010 181 / 1e-49 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184300 [exp] 943 / 0 AT5G05460 727 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) Potri.008G073001 [exp] 186 / 2e-54 AT3G11040 171 / 1e-49 Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1) Potri.008G072901 [exp] 129 / 2e-34 AT5G05460 0 / 1 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017430 [exp] 832 / 0 AT5G05460 715 / 0.0 Endo-beta-N-acetyglucosaminidase 85A, Glycosyl hydrolase family 85 (.1) Lus10007526 [exp] 827 / 0 AT3G11040 719 / 0.0 Endo-beta-N-acetyglucosaminidase 85B, Glycosyl hydrolase family 85 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF03644 [poplar] [flax] Glyco_hydro_85 Glycosyl hydrolase family 85
Representative CDS sequence Show only first row Show all	>Potri.010G184200.2 pacid=42798281 polypeptide=Potri.010G184200.2.p locus=Potri.010G184200 ID=Potri.010G184200.2.v4.1 annot-version=v4.1 ATGTCTGTACCACAAGAGCATCAATCCTCCACCGTGGACCCTCCTCCCCCCCCTCCATTTGATCCAACTCAGCCATCCATTCCCATCTCCTACCCTATCA AGACCCTTGAAGACTTAGGTTCTCGGGCTTACTTCAAGTCCTTTCACTGCCCTTTTAACATATGTTCTGTTCCTCTTGAAAATTCTGTTTTAGATAACAG GCCCAGGGTTCTTGTGTGCCATGATATGCAAGGAGGTTATGTGGATGATAAGTGGATCCAGGGAGGGAGCAATCCTGATGCTTATGCAATTTGGCATTGG TATTTGATTGATGTGTTCGTTTACTTTTCACATAATTTGGTTACTTTGCCTCCTCCTTGCTGGACTAATACTGCTCACCGACATGGGGTTAAGGTGTTAG GGACTTTCATCACAGAATGGGATGAAGGGAAAGCTATCTGCAATAAACTGCTTTCAACAAAAGAGTCTGCTCATATGTATGCCGAGCTGTTGTCAGAGCT TGCTGTTGCTTTGGGTTTTGATGGATGGCTGCTCAATATGGAGGTAAAATTGGAGTTGGGGCAGATTCCTAATTTGAAAGAATTTATCAGCCATCTAACC CAGACCATGCACTCCTCATTGCCTGGATCTTTGGTGATATGGTATGATAGTGTTACAATTTATGGAAATCTTAGCTGGCAGAATCAACTGAATGATAAAA ATAAGCCATTCTTTGATATCTGTGATGGCATATTTGTAAACTATTCATGGAAGGAAGACTACCCAAGAAGCTCAGCGGCTGTTGCTGGTGATAGAAAGTT TGATGTCTACATGGGAATAGATGTGTTTGGAAGAAACACTTTTGGTGGTGGACAATGGATGACAAATGTTGCATTGGATGTGCTGAAGAAGGACGATGTG TCAGCTGCCATATTTGCACCCGGATGGGTCTACGAGACTAAGCAACCACCTGATTTTCAAACTGCTCAAAATCATTGGTGGTCCCTTGTCGAAAAATCAT GGGGAGCAGTAAAGTTTTATCCTAAAACCCTACCATTTTACTCAAATTTTGATCAGGGCCATGGTTATCATATTTCTGTTGAAGGAGGCCAAGTGTCAGA TGCTCCTTGGAATAACATTTCTTCTCAAGGCTTTCAGCCGTTCCTCAAGTTCACTGGTAACCCAAGTCCTGATACTATTGAAGTCTTTGTAGATTTCAAG GAAGCATCTTACAGAGGAGGAGGTAATATCACATTTAAAGGGACTCTTGAAGAGAACACAGATTTTACAACAATAATCTTTCAGGGAGAGCTGCTTATGG ATGCAGTGCCTCTTCACATAACACATTCTGTAAAATCAGAAGGGGATTCTCTACTGGGACTTTCACTTCATTTCTCTTCCGCTGCAAATGAAAGGACGTC AGTACTTCTTGCATCCTGGGGAACAAACCAATTCTCAAGAAAATTCAGTAAAATCATAGCGCCCTGTCAAGTTAATAAACCAAGAACTGCTCCAGGATGG GCTGTACTGGAGAGTAGTATTGAAATGAATGGATACACATTAACAGAAATTCATGCTGTTTGCTACAGGCCAAAGCATGAGCATTCCCAACTGAGGTTAG AACATAGAACAGATGGCTCTGAGGATACATTAACGTATAGTCCAAAAGAGTATCACGCAGTCCTTGGTCACATCACAATGAATACTTCTAAAGAGAATAC ATATTTTCCTCCCTCTAGCTCATGGCTTGTCGAAGGTCATTATATCAAATGGAGTTCAGGTTCCCAGGGTTCCAAGACCGTTAGTGTCAAGATCGATTGG AAATCGAAAGACGGAACTGACTCTCAGTTCCCCAAATACAATATTTATGTCGAGAAGTTACCAAAACAAGCTGTTCGAAATCATGGTGTAGGACTAGGAG GGGTTCAGGAGTACCTTGGAGTGGCAAATGTAGAAGCCTTTTATGTTTCTGAACTTCCAATTCCTGCAACCACTTCTAGCATCAAATTCATTATTCAAGT CTGTGGTGTAGATGGCGTTTGCCAGAACATGGATGATTCTCCATATTTTCAACTCGATGTCAAAGCAACGACGGTAGGCGGCAGAAAGATGTTTCAACTC TTCAGCTATGTTGAAAGGAATAACCTAGTAAATCCGTGGGCACATTCGACAAATGGACAACAATTACTAGGCTGCAAAAGTCATGGGAAGCTTGGTATTC GGCACTTTGAGTGGTTCGACTCACTAATGTGTGAAAGATCGAAGGCTGTTATTAGAGGGCTTTTGCAGAGTACTTCAAGAATGGAGATCAGGGAGTTGCT GAGGTTGCCCTCAAGAGAGAGGAAAATCTGGGTCATTATGATTCTATCTATGGTTTTTGTCATACTTCTGTGCACATTATCAAATGGGAAATGGGGAAAG GAAACTCTTGTATTTCCCTAA
AA sequence Show only first row Show all	>Potri.010G184200.2 pacid=42798281 polypeptide=Potri.010G184200.2.p locus=Potri.010G184200 ID=Potri.010G184200.2.v4.1 annot-version=v4.1 MSVPQEHQSSTVDPPPPPPFDPTQPSIPISYPIKTLEDLGSRAYFKSFHCPFNICSVPLENSVLDNRPRVLVCHDMQGGYVDDKWIQGGSNPDAYAIWHW YLIDVFVYFSHNLVTLPPPCWTNTAHRHGVKVLGTFITEWDEGKAICNKLLSTKESAHMYAELLSELAVALGFDGWLLNMEVKLELGQIPNLKEFISHLT QTMHSSLPGSLVIWYDSVTIYGNLSWQNQLNDKNKPFFDICDGIFVNYSWKEDYPRSSAAVAGDRKFDVYMGIDVFGRNTFGGGQWMTNVALDVLKKDDV SAAIFAPGWVYETKQPPDFQTAQNHWWSLVEKSWGAVKFYPKTLPFYSNFDQGHGYHISVEGGQVSDAPWNNISSQGFQPFLKFTGNPSPDTIEVFVDFK EASYRGGGNITFKGTLEENTDFTTIIFQGELLMDAVPLHITHSVKSEGDSLLGLSLHFSSAANERTSVLLASWGTNQFSRKFSKIIAPCQVNKPRTAPGW AVLESSIEMNGYTLTEIHAVCYRPKHEHSQLRLEHRTDGSEDTLTYSPKEYHAVLGHITMNTSKENTYFPPSSSWLVEGHYIKWSSGSQGSKTVSVKIDW KSKDGTDSQFPKYNIYVEKLPKQAVRNHGVGLGGVQEYLGVANVEAFYVSELPIPATTSSIKFIIQVCGVDGVCQNMDDSPYFQLDVKATTVGGRKMFQL FSYVERNNLVNPWAHSTNGQQLLGCKSHGKLGIRHFEWFDSLMCERSKAVIRGLLQSTSRMEIRELLRLPSRERKIWVIMILSMVFVILLCTLSNGKWGK ETLVFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184200 [exp]	0	1
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Potri.016G016700 [exp]	1.41	0.9110
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	2.44	0.9063
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	2.82	0.8697
AT1G32910			HXXXD-type acyl-transferase fa...		Potri.007G003800 [exp]	3.00	0.8885
					Potri.013G032900 [exp]	4.47	0.8839
					Potri.017G008901 [exp]	4.47	0.8681
AT1G07160			Protein phosphatase 2C family ...		Potri.013G099400 [exp]	12.72	0.8370
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.010G009750 [exp]	12.96	0.8577
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	15.49	0.8416
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	18.43	0.8493	ATCNGC19.5

Compare expression of checked genes

Potri.010G184200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.