Plant FIBer expression Database

Pt-PFE2.1 (Potri.010G184500) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-PFE2.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G11050 311 / 2e-107 ATFER2 ferritin 2 (.1)
AT2G40300 299 / 1e-102 ATFER4 ferritin 4 (.1)
AT3G56090 273 / 1e-92 ATFER3 ferritin 3 (.1)
AT5G01600 271 / 8e-92 ATFER1 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
AT3G61010 81 / 4e-17 Ferritin/ribonucleotide reductase-like family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G072700
[exp]
389 / 3e-138 AT3G11050 330 / 9e-115 ferritin 2 (.1)
Potri.006G103900
[exp]
282 / 5e-96 AT5G01600 262 / 3e-88 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.016G124700
[exp]
275 / 2e-93 AT5G01600 294 / 8e-101 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Potri.016G124900
[exp]
270 / 2e-91 AT5G01600 264 / 4e-89 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007523
[exp]
330 / 4e-115 AT2G40300 360 / 4e-127 ferritin 4 (.1)
Lus10017433
[exp]
327 / 8e-114 AT2G40300 366 / 3e-129 ferritin 4 (.1)
Lus10002865
[exp]
283 / 2e-96 AT5G01600 331 / 2e-115 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10012233
[exp]
280 / 5e-95 AT5G01600 333 / 4e-116 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10022673
[exp]
272 / 5e-92 AT5G01600 339 / 1e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
Lus10012499
[exp]
268 / 2e-90 AT5G01600 338 / 3e-118 ARABIDOPSIS THALIANA FERRETIN 1, ferretin 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0044 Ferritin PF00210 Ferritin Ferritin-like domain
Representative CDS sequence
>Potri.010G184500.2 pacid=42796778 polypeptide=Potri.010G184500.2.p locus=Potri.010G184500 ID=Potri.010G184500.2.v4.1 annot-version=v4.1
ATGTTACTTAAGGCAGCACCAGCCTTTTCTCTATTGAACGCGACAGGGGATAATCTGGGTTCCCTGTTTCCATCTGTTTCTTCTCTGTCTAACAAAAATC
TTTCTGTTTCCCCTTCATTTCTTCGCTCAAAAACTGGGTCTGGATTCGTTGTTTGTGCCTCAAAGGGGGCTAATAATAGACCTTTAACTGGTGTCGTCTT
TGAGCCTTTTGAGGAGGTTAAGAAAGAACTGAATCTCGTGCCTAATGTGCCACAAGTTTCTCTTGCCAGGCAGAAATTTACCGATGAGAGCGAAGCCGCC
ATCAATGAACAGATCAATGTGGAGTACAATGTCTCATATGTGTACCATGCGATGTTTGCCTACTTCGATAGAGATAATGTGGCACTCAAGGGCCTTGCCA
AGTTTTTCAAGGAATCTAGTATCGAAGAAAGAGAGCATGCTGAGAAATTGATGGAATACCAGAATAAACGGGGTGGAAAAGTGAAGCTGCAGTCTATTTT
GATGCCCCTCTCTGAGTTTGATCATGCGGAGAAGGGAGATGCACTGTATGCAATGGAGCTTGCCTTGTCTTTGGAAAAACTAACGAATGAAAAGCTCCTG
AACTTGCATAGTGTGGCCGAGAAGAACAAAGACGTGCAGTTGACAGATTTCGTTGAAAGTGAGTTTTTAGCTGAGCAGGTGGATGCTATCAAAAAGATCT
CAGAATATGTTGCTCAGCTGCGAAGAGTGGGTAAAGGACATGGAGTGTGGCACTTCGACCAGATGCTCCTCCATGGGGAAGAAGTAGTTGCATAA
AA sequence
>Potri.010G184500.2 pacid=42796778 polypeptide=Potri.010G184500.2.p locus=Potri.010G184500 ID=Potri.010G184500.2.v4.1 annot-version=v4.1
MLLKAAPAFSLLNATGDNLGSLFPSVSSLSNKNLSVSPSFLRSKTGSGFVVCASKGANNRPLTGVVFEPFEEVKKELNLVPNVPQVSLARQKFTDESEAA
INEQINVEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSIEEREHAEKLMEYQNKRGGKVKLQSILMPLSEFDHAEKGDALYAMELALSLEKLTNEKLL
NLHSVAEKNKDVQLTDFVESEFLAEQVDAIKKISEYVAQLRRVGKGHGVWHFDQMLLHGEEVVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G11050 ATFER2 ferritin 2 (.1) Potri.010G184500
[exp]
0 1 Pt-PFE2.1
AT5G39600 unknown protein Potri.004G228566
[exp]
7.00 0.7986
AT1G71730 unknown protein Potri.002G063100
[exp]
10.86 0.7768
AT3G15010 RNA-binding (RRM/RBD/RNP motif... Potri.016G048100
[exp]
11.66 0.7501
Potri.001G340100
[exp]
48.76 0.7213
AT3G27740 VEN6, CARA VENOSA 6, carbamoyl phosphate ... Potri.003G080900
[exp]
51.96 0.7419 Pt-CARA.2
AT4G17310 unknown protein Potri.017G068600
[exp]
57.49 0.7327
AT5G64670 Ribosomal protein L18e/L15 sup... Potri.016G002400
[exp]
63.68 0.7107
AT5G55140 ribosomal protein L30 family p... Potri.014G157400
[exp]
64.06 0.7344
AT3G04610 FLK flowering locus KH domain, RNA... Potri.013G043000
[exp]
65.93 0.6886
AT2G35795 Chaperone DnaJ-domain superfam... Potri.006G131200
[exp]
65.99 0.6857

Potri.010G184500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.