Plant FIBer expression Database

Potri.010G184600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09870 660 / 0 histidine acid phosphatase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G072600
[exp]
825 / 0 AT1G09870 684 / 0.0 histidine acid phosphatase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040951
[exp]
662 / 0 AT1G09870 656 / 0.0 histidine acid phosphatase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00328 His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence
>Potri.010G184600.1 pacid=42800256 polypeptide=Potri.010G184600.1.p locus=Potri.010G184600 ID=Potri.010G184600.1.v4.1 annot-version=v4.1
ATGTTTGCTATTTTGAAGCTTCTGTTGTTATCGATATCGTCGCAATTAAATGCTGATCAAGGTTTCGATGTCCGTCGCCACCTCTGCACTGTAACGAGGT
ACGATGTAGCGAAGGATATGGCTAACACTTCAGCTGTAGCTGCCAATAATATTCCTAATGGATGCACTCCTATCCACGTAAACCTTGTGGCAAGACATGG
AACTCGTTCTCCTAACAAAAAACGGATGAGAGAGTTAGACAAGTTGGCTTCTCACTTGGGGGAACTTATAAGAGAAGCTGAAGAACAAAATTTGTCTTTG
GAGAAAGTTCCGTTGTGGTTGCGGGGATGGAAATCTCCTTGGAGAGGGAAATTGAAAGGTGGAGAATTGATCAGGAAAGGAGAAGAAGAATTGTACAATC
TTGGAATCAGGATTAGAGAGAGATTTTCAGAATTATTTGATGAGGAATACCACCCAGATGTTTATCCTATAAAGGCTACACAGGTTCCTCGTGCATCAGC
TAGTGCTGTGGCATTTGGCATGGGGCTTTTAAGTGAGAAGGGAGGTCTAGGACCTGCACAACATCGAGCTTTTGCTGTTACAAGTGAAATCCCTGCTAGC
GACATTATACTGAGGTTTCATGATTGTTGTGGAAACTATAAGGATTTTAAGAAGAGGCAGGAGCCTGCTGTTGATAAGCTAAAGGAACCTGTACTGGATG
AAATCACGTCTGCATTAGTGAGCCGCTATGGGCTCAAATTCACTAGACAGGATACTGCTACGTTGTGGTCTCTGTGTAAACAGGAAGCATCTGTCCTGGA
TATAACTGATCGAGCTTGTGGTCTTTTCAGCCCTTCCGAGGTTGCTTTGCTGGAGTGGGCAGATGATTTGGAGCTGTTTGTATTGAAGGGTTATGGTAAT
TCAATAAATTATCGAATGGGAGTGCCATTGCTTGAAGATGTTGTCCAGTCCATGGAGCAAGCCATTAAAGCAAATGAAGAAAAGCATCCTCCTGGAAGTT
ATGAGAAGGCAAGGCTACGGTTTGCACATGCAGAGACCGTGGTCCCATTTACATGCCTCCTTGGACTTTTTCTTGAAGGATCTGAGTTCCAGAAAATACG
AAGGGAAGAACCTTTGGAGCTCCCTCCAAAACCTCCTCAGAGTAGAAATTGGCGGGGCAGCATTGTGGCACCTTTTGCTGGTAACAACATGCTGGTCCTG
CACAGCTGCCCGGCAAACTCTGCAAGCAAGTACTTTGTCCAAGTACTCCACAATGAACAACCGATTCCAATGACGGGTTGTAATGGTTCCGATTTTTGCC
CTTTTGAAGAGTTTAAGGAAAAAATAGTGGCTCCTCATCTGAAGCATGACTATGATAGTGTGTGCACTGCAAAGCTGGAAGAACCAGAGCAGAAACCTGC
AAGCAGTAAGTTATCACAACTGTTTCGTTGTCTATTATCTCTACAGAATGATGATACACGGTCCACCAAGGATGGATTATAG
AA sequence
>Potri.010G184600.1 pacid=42800256 polypeptide=Potri.010G184600.1.p locus=Potri.010G184600 ID=Potri.010G184600.1.v4.1 annot-version=v4.1
MFAILKLLLLSISSQLNADQGFDVRRHLCTVTRYDVAKDMANTSAVAANNIPNGCTPIHVNLVARHGTRSPNKKRMRELDKLASHLGELIREAEEQNLSL
EKVPLWLRGWKSPWRGKLKGGELIRKGEEELYNLGIRIRERFSELFDEEYHPDVYPIKATQVPRASASAVAFGMGLLSEKGGLGPAQHRAFAVTSEIPAS
DIILRFHDCCGNYKDFKKRQEPAVDKLKEPVLDEITSALVSRYGLKFTRQDTATLWSLCKQEASVLDITDRACGLFSPSEVALLEWADDLELFVLKGYGN
SINYRMGVPLLEDVVQSMEQAIKANEEKHPPGSYEKARLRFAHAETVVPFTCLLGLFLEGSEFQKIRREEPLELPPKPPQSRNWRGSIVAPFAGNNMLVL
HSCPANSASKYFVQVLHNEQPIPMTGCNGSDFCPFEEFKEKIVAPHLKHDYDSVCTAKLEEPEQKPASSKLSQLFRCLLSLQNDDTRSTKDGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09870 histidine acid phosphatase fam... Potri.010G184600
[exp]
0 1
AT2G27770 Plant protein of unknown funct... Potri.017G116200
[exp]
13.26 0.8658
AT4G26900 HISN4, HISHF, A... HIS HF (.1) Potri.009G061700
[exp]
14.83 0.8716 HF.2
AT2G16430 ATPAP10, PAP10 purple acid phosphatase 10 (.1... Potri.005G233400
[exp]
16.34 0.7561 Pt-PAP1.2
AT1G70780 unknown protein Potri.010G110800
[exp]
22.64 0.8631
AT5G53890 AtPSKR2 phytosylfokine-alpha receptor ... Potri.001G398500
[exp]
22.71 0.7616
AT4G33925 SSN2 suppressor of sni1 2, unknown ... Potri.009G091800
[exp]
30.00 0.8392
AT2G24400 SAUR-like auxin-responsive pro... Potri.010G253800
[exp]
30.26 0.7741
AT5G05560 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiq... Potri.010G187201
[exp]
32.24 0.8554
AT5G20890 TCP-1/cpn60 chaperonin family ... Potri.006G128600
[exp]
35.35 0.8481
AT1G80530 Major facilitator superfamily ... Potri.006G060900
[exp]
42.14 0.8461

Potri.010G184600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.