Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35920 310 / 8e-103 MCA1 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) AT2G17780 298 / 3e-98 MCA2 mid1-complementing activity 2, PLAC8 family protein (.1.2.3.4) AT1G58320 69 / 9e-14 PLAC8 family protein (.1) AT3G18470 67 / 3e-13 PLAC8 family protein (.1) AT3G18460 67 / 4e-13 PLAC8 family protein (.1) AT5G35525 64 / 2e-12 PLAC8 family protein (.1) AT1G49030 66 / 4e-12 PLAC8 family protein (.1) AT3G18450 64 / 9e-12 PLAC8 family protein (.1) AT1G14880 59 / 3e-10 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT1G14870 59 / 3e-10 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G110000 [exp] 332 / 2e-111 AT4G35920 600 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Potri.012G092200 [exp] 70 / 5e-14 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 68 / 3e-13 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 65 / 5e-12 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G060900 [exp] 62 / 2e-10 AT1G49030 199 / 2e-62 PLAC8 family protein (.1) Potri.010G108900 [exp] 59 / 5e-10 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 57 / 1e-09 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 57 / 2e-09 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G127700 [exp] 52 / 1e-07 AT1G68610 174 / 5e-56 PLANT CADMIUM RESISTANCE 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025955 [exp] 334 / 5e-112 AT4G35920 621 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10014256 [exp] 332 / 3e-111 AT4G35920 625 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10028421 [exp] 333 / 3e-110 AT4G35920 634 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10041875 [exp] 330 / 9e-110 AT4G35920 624 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10034298 [exp] 56 / 6e-09 AT1G14870 160 / 7e-51 PLANT CADMIUM RESISTANCE 2 (.1) Lus10021696 [exp] 54 / 2e-08 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 50 / 3e-07 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10019478 [exp] 47 / 6e-06 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10043325 [exp] 46 / 1e-05 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10009036 [exp] 45 / 2e-05 AT1G68630 122 / 2e-36 PLAC8 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Potri.010G184700.2 pacid=42797605 polypeptide=Potri.010G184700.2.p locus=Potri.010G184700 ID=Potri.010G184700.2.v4.1 annot-version=v4.1 ATGGCAAATCTTGCACAGGTAGCAGGAGTACACACATCAGGCCTTGCAAACATGATCATATCATCAGCAAGAAACGCCACCGCGCACAAGAAAAACTGCG AGCAACTAGCAGAGCACGTGAAGATTATAAGCAACCTGCTGGAGAAGATAAAATCAACGGACCTGGTGAACTTGCCTGCTACAAAAGAGCCATTGGATTG TCTAGAGGAAGCTTTGAGAAAGGCACTTGATTTGGTGGAGAGCTGCAAGGAAAAGAGCTATCTATACATGCTTGCTATGGGATGGAGTGTCGTTTATCAG TTTAGACAAGTTCATGATGAAATTGATAGGTATCTTAGGCTTGTACCCTTGATTTCTCTGGTCCATGAGTTCAGGATGCAGGATATAAAGGAAGGCTGGC AGGCAATTGAAGAGGATCAAAGAGACTATACCCTCGATGAAGACGATGTAGAGGCTCAAAGTGTGATTTTAAAACCTGACCGTTCAAAGAAAGATGCGAA CATGTTGGAGAAGTCTCTATCTCGCAGATATCCTGACTTGGGATTCCAGGAGGCTCTCCAAGAAGAAAAAGAGAAATTACAGATTGAGCTGCAGAGATCA AGAACAAGCAAGGAGCCAAATCAATGCCGAGTAATTGAACATCTAATTGAGGTAACAGAAAATGTCGTCAATGATGTTCCTGCAAAGAAGGTTACGAAAC TTCTTGTTAATGAGCCAACTTATGTTGTCTCAGGGTACATAACCAATGCAAGATCCAGCAATGGGGTCCTAAAGCCTGGAGATAAGTGCCAGTCTGAATG GCAGGTTGATCTTTTTGATTGTTGCAAGGAGCCATGTTTGAGCTTGAAGACCTGCATTTATCCCTGTGGTGTATTTTCAAGGATAGCCAATGTGGTGTCG AAAGGAAAGACATCTCGCGAGCGTGCGATTAATGATCTAATGGCGTACTCTATTTTTTGTGGATGTTGCTGTTACACCTGCTGCATCAGGAAAAAAATTC GGCATCTTTTCGACATTGAGGGAGGGTCATGTGATGACTTCTTAACTCATTTCATGTGTTGCTGTTGTGCAATGGTTCAAGAATGGCGAGAGCTTGAAGT CAGAGGCTTTGAAGGTTGCCCGGAGAGAAAGATGATTCCTCCGCCTTACCAGTATATGATGCCTTAA
AA sequence Show only first row Show all	>Potri.010G184700.2 pacid=42797605 polypeptide=Potri.010G184700.2.p locus=Potri.010G184700 ID=Potri.010G184700.2.v4.1 annot-version=v4.1 MANLAQVAGVHTSGLANMIISSARNATAHKKNCEQLAEHVKIISNLLEKIKSTDLVNLPATKEPLDCLEEALRKALDLVESCKEKSYLYMLAMGWSVVYQ FRQVHDEIDRYLRLVPLISLVHEFRMQDIKEGWQAIEEDQRDYTLDEDDVEAQSVILKPDRSKKDANMLEKSLSRRYPDLGFQEALQEEKEKLQIELQRS RTSKEPNQCRVIEHLIEVTENVVNDVPAKKVTKLLVNEPTYVVSGYITNARSSNGVLKPGDKCQSEWQVDLFDCCKEPCLSLKTCIYPCGVFSRIANVVS KGKTSRERAINDLMAYSIFCGCCCYTCCIRKKIRHLFDIEGGSCDDFLTHFMCCCCAMVQEWRELEVRGFEGCPERKMIPPPYQYMMP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35920		MCA1	mid1-complementing activity 1,...		Potri.010G184700 [exp]	0	1
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	3.00	0.7393
AT1G55790			Domain of unknown function (DU...		Potri.011G165600 [exp]	7.07	0.7695
AT3G14250			RING/U-box superfamily protein...		Potri.003G187700 [exp]	8.60	0.7584
AT1G25500			Plasma-membrane choline transp...		Potri.008G118200 [exp]	16.15	0.7240
AT4G21490		NDB3	NAD(P)H dehydrogenase B3 (.1)		Potri.011G042500 [exp]	24.91	0.7064
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	25.57	0.7276
AT2G23790			Protein of unknown function (D...		Potri.002G133400 [exp]	28.63	0.7227
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.002G133700 [exp]	30.19	0.6888	BES1.2
AT1G27150			Tetratricopeptide repeat (TPR)...		Potri.010G035400 [exp]	30.39	0.7021
AT3G48770			DNA binding;ATP binding (.1)		Potri.015G102401 [exp]	32.52	0.6903

Compare expression of checked genes

Potri.010G184700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.