Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13790 527 / 7e-179 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT3G48670 486 / 5e-164 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 446 / 1e-148 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G15910 390 / 3e-127 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 371 / 7e-120 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT5G59390 367 / 3e-119 XH/XS domain-containing protein (.1) AT4G01180 349 / 2e-112 XH/XS domain-containing protein (.1) AT1G80790 330 / 3e-104 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT4G01780 249 / 3e-75 XH/XS domain-containing protein (.1) AT3G29375 140 / 1e-36 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G202700 [exp] 572 / 0 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.001G240666 [exp] 479 / 3e-164 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.003G181000 [exp] 436 / 5e-145 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.001G240670 [exp] 59 / 6e-11 ND / Potri.010G087400 [exp] 47 / 5e-05 AT3G22430 418 / 3e-142 unknown protein Potri.008G152900 [exp] 45 / 0.0002 AT3G22430 409 / 2e-138 unknown protein Potri.003G188350 [exp] 44 / 0.0003 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002702 [exp] 517 / 2e-176 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 503 / 6e-171 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10002703 [exp] 425 / 7e-139 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037986 [exp] 399 / 1e-130 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 395 / 5e-129 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 393 / 3e-128 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10032933 [exp] 373 / 5e-123 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10000949 [exp] 260 / 8e-78 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000948 [exp] 186 / 9e-55 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10040288 [exp] 164 / 9e-45 AT1G15910 185 / 5e-53 factor of DNA methylation 1, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF03468 [poplar] [flax] XS XS domain CL0221 [poplar] [flax] PF03470 [poplar] [flax] zf-XS XS zinc finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G184800.7 pacid=42796934 polypeptide=Potri.010G184800.7.p locus=Potri.010G184800 ID=Potri.010G184800.7.v4.1 annot-version=v4.1 ATGTCTCATAGATCACACGAAAGGGACATAAGAGAGTCCGAGTTTTACGAGTATGAAGAAAGGCATTATGAAGATTTGAAGAAGGAAAGAATTAGAGTCA GAGTTTCAGGTTCAGTTTACAAATGCCCCTATTGTCATGGGAGAGATTACCATCTCAGGGAGCTTCTCCAGCATGCTTCTGATCTTGGTAGAGGATCAAG AAGAGGGACTCTAAAAGAGGAAGCTCAACACCTAGCTCTTGCAAGGTATATTCGGAGGCATCTTGATGTGAAGGATAGATCAGAGTCCTCCTCGAAAAGG TTCAAAACTGAACCTCCTGCCGTATATGACCATAATAAGGAGCAGCTATTTGTGCACTCTGCAAAAAGGCCCAAAACTGAATCTCTTGCTGCATGTGATC ATGATAAAGAGCAGCCTTTTGTCCCCTCTGCCAAAAGGCCCAAAACTGAATGTCACGCTGTACATGATCATGATAAAGAGCAGCTGCTTGTTTGGCCCTG GATGGGGGTTCTTGCCAATATACAAACCGAGATGAAGGATGGACGCCGTGTTGGGGAAAGTGGCTCAAAACTCAGGGATGAATTAGCTAGAAAAGGTTTT AATCCTGTTAGGGTGCATCCTTTATGGGGCCGATATGGTCATTCAGGATTTGCCATTGTAGAGTTCAAGAAAGACTGGGATGGCTTCAGTAATGCCATTA TGTTTGAAAAGGATTTTGATTCGAATCATTGTGGAAAGAAGGAATATACTGAAACTCCAGTGAGGGATCGAGGACAGAGGTTATATGGATGGATTGCCCA AGAGGATGACTATAAAGCCAGTGGTCTTGTAGGAGATCATCTCAGAAAGAATGGGGATTTAAAGAGTGTTGATGGGAAACAAGCCGAGGACCAAAGGAAG GATGCCAAACTTGTTTCCAACTTGAAAAGCACCTTAGAGAGGAAACATGACCACCTTAGAGAAATGGAGAGCAGATATAAAGAGACTAGTGCATCTTTGA ACAAGGTGATGGATCAAAAGGAAGCCATGGAGAAGTCATATAATGAAGAAATAAGAAAAATGCAGCAGAATGAACATGATCATTTTGAGGAGATTTCTGT TGAGCATGAGAAGGTCACGCGGCTACTACTAGCTCAGAGAGAAGAATTGAAGCAGCGCGAGAAGCAACTGCAGCGACGTGAGGTGCAGAATGAAAATGAT CGACTGAAACTTCATCACGAGAAGAAAATGAATGAGAGAGCAACCTTGGAGCAGAAAAGGGCAGATGAAAGTGTGTTGAGGTTGGCAGAAGAACAAAAGA GGGAAAAGGAGAAACTGCACAAGAAAATTTTTGATCTGGAAAAGAAGCTTGATGCTAAACAAGCACTGGAGTTGGAGATAGAGTGCATGAAGAATTCTTT ACAAATTATGAAACACATGGGAGAGGATGAAGACCTTGATGTCAAGAAAAAAATGGATACAGTTCGAGAAGAATTGAAAGAGAAGGAGGAAGAACTGGAT GGATTGGAGCAACTTAATCAAGCCCTTATCATCAAGGAACGCAAAACCAATGATGAATTGCAGGACGCTCGCAAAGAGTTAATAAGTTACTTGGGGCAAT GGACAACCCGTGCTTTTATTGGTGTTAAGAGAATGGGAGATCTTGATGGCAAACCATTTCATGAGGCAAGCAAGATAAAATTTTTAGATGAAGAAGCTGA TGAGAAAGCACTTGAGTTGTGTTCACTATGGGAAGATCGTCTTCGAGATCCGAGCTGGCATCCATTCAAGGTCATCCTTGACAAGGAAGGGAATAGTAAG GAAATAATCAACGAAGATGATGAAAATTTGAGAAGTTTGAAGAGTGAATTTGGTGATGAAGTTTTTAATGCTGTGGTAACAGCATTAAAGGAAATGAACG AGTATAACCCAAGTGGTAGGTACGTAATAAAAGAGCTATGGAATTTCAAAGAGGAAAGGAAGGCAACACTGAGTGAGGGAGTGATGCACATATTAAAGCA GTGGAGACAGCTTAAGAGAAGGAAAACCTGA
AA sequence Show only first row Show all	>Potri.010G184800.7 pacid=42796934 polypeptide=Potri.010G184800.7.p locus=Potri.010G184800 ID=Potri.010G184800.7.v4.1 annot-version=v4.1 MSHRSHERDIRESEFYEYEERHYEDLKKERIRVRVSGSVYKCPYCHGRDYHLRELLQHASDLGRGSRRGTLKEEAQHLALARYIRRHLDVKDRSESSSKR FKTEPPAVYDHNKEQLFVHSAKRPKTESLAACDHDKEQPFVPSAKRPKTECHAVHDHDKEQLLVWPWMGVLANIQTEMKDGRRVGESGSKLRDELARKGF NPVRVHPLWGRYGHSGFAIVEFKKDWDGFSNAIMFEKDFDSNHCGKKEYTETPVRDRGQRLYGWIAQEDDYKASGLVGDHLRKNGDLKSVDGKQAEDQRK DAKLVSNLKSTLERKHDHLREMESRYKETSASLNKVMDQKEAMEKSYNEEIRKMQQNEHDHFEEISVEHEKVTRLLLAQREELKQREKQLQRREVQNEND RLKLHHEKKMNERATLEQKRADESVLRLAEEQKREKEKLHKKIFDLEKKLDAKQALELEIECMKNSLQIMKHMGEDEDLDVKKKMDTVREELKEKEEELD GLEQLNQALIIKERKTNDELQDARKELISYLGQWTTRAFIGVKRMGDLDGKPFHEASKIKFLDEEADEKALELCSLWEDRLRDPSWHPFKVILDKEGNSK EIINEDDENLRSLKSEFGDEVFNAVVTALKEMNEYNPSGRYVIKELWNFKEERKATLSEGVMHILKQWRQLKRRKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13790		FDM4	factor of DNA methylation 4, X...		Potri.010G184800 [exp]	0	1
AT5G63700			zinc ion binding;DNA binding (...		Potri.001G305900 [exp]	1.00	0.7817
AT5G22320			Leucine-rich repeat (LRR) fami...		Potri.004G199200 [exp]	4.00	0.7504
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Potri.012G081500 [exp]	4.24	0.7487
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	4.47	0.7482
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Potri.010G202700 [exp]	5.91	0.7208
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.006G106500 [exp]	7.74	0.6980
AT5G13300		AGD3, VAN3, SFC	ASCULAR NETWORK DEFECTIVE 3, S...		Potri.003G163200 [exp]	8.36	0.7067
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Potri.008G079300 [exp]	8.66	0.7326
AT5G09850			Transcription elongation facto...		Potri.001G307600 [exp]	11.95	0.7004
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.001G020300 [exp]	11.95	0.7050

Compare expression of checked genes

Potri.010G184800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.