Plant FIBer expression Database

Potri.010G185100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05480 601 / 0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
AT3G14920 366 / 4e-119 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G072400
[exp]
955 / 0 AT5G05480 577 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Potri.011G109700
[exp]
375 / 5e-122 AT3G14920 708 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017437
[exp]
664 / 0 AT5G05480 605 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10025775
[exp]
349 / 7e-113 AT3G14920 568 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10017926
[exp]
349 / 5e-112 AT3G14920 649 / 0.0 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10007518
[exp]
315 / 4e-104 AT5G05480 315 / 1e-104 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10025771
[exp]
244 / 2e-72 AT3G14920 396 / 1e-130 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10035890
[exp]
149 / 7e-39 AT3G14920 259 / 1e-79 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
Lus10007519
[exp]
109 / 4e-28 AT5G05480 81 / 9e-19 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF12222 PNGaseA Peptide N-acetyl-beta-D-glucosaminyl asparaginase amidase A
Representative CDS sequence
>Potri.010G185100.1 pacid=42798692 polypeptide=Potri.010G185100.1.p locus=Potri.010G185100 ID=Potri.010G185100.1.v4.1 annot-version=v4.1
ATGCACCCATCTCCCACTTTGTTTCTCCTCCTCGTCGTGACCGCGTCCCTTCCCCTCGCTCGCTCTACTTCACCAGATCACTTTTTCAAGCCATCCTCGC
CACCTCGCTCACCATCACCATCACCCGAACCCTCACCCGAGCCCGAACCTAAAGAATACTTCGAACTCACCCATCCTCTACCCGGCGATCGTTTGACCCC
ATCATGCGTGCTCCAAACCATCAACCATTCATTTGCCAATACAATCAACAAACCTCCTTTCTCCACCCCATACTACCCACCACTCGACTGCCCCCCTCCT
TGGTCCCACGTTACCCTCGAATTCCACGTCAAATCCAAAGGGGACCAATACGATCGCGTCTCCGCCTTATGGCTCGGTGGCTCCGAGCTCCTCCGCACCA
GCACCGCTGAACCCGAAGAACACGGTATCTTCTGGAATGTTCGGAAAGACATCACTAAGTACTCCTCTCTCCTCGTACAAAACTACCTCAACTTCACTCT
CATGCTCGAAAACATCGTTAACGATATCTACACCGGCGTTTACCATGTTAATGTCACTCTCTACTTCTACAAAGATAACGCAGTCAAGGTTCCTTTGACC
GGTATAAATCAAAATCTGATTGCCCCAGTTTTACAATCACCCTTGTTTGGAGACAAGAGCATGTATGATCCACCAGCTGATTTGATAATTCCGATTTCAG
CATCCGATAGCACAAAGGGTTATTGGTTTATAATAGAGAGTGAATTGGATGTTAAATTTGAGAAGGTTAGATTTCCGTTGAATACACGGAAAGTCGTTTT
GGAATTATATGTGTCGTTTCATGGGAATGACGAGTTTTGGTATTCGAATCCGTCGAATTCTTACATTAGAATGAATAATCTGAGCACTCCGCGGGGTAAT
GGCGCGTTTAGGGAGGTCTTTGTTACAATTGATGGGAAATTAGTGGGATCAGAAATGCCATTTCCGGTTATCTTTACCGGAGGGATTAATCCTTTGTTTT
GGGAACCGGTTGTAGCGATCGGTGCTTTTAATTTACCTTCGTATGATTTTGATTTGACGCCCTTTTTAGGGATGCTTTTAGACGGGAAAGATCATCTTTT
TGGTATTGGAGTTACGGATGGGATTGAGTATTGGCTTGTTGATGCTAATTTGCACGTTTGGTTGGACACAGCTTCCACGGTTGTTGAAGCTAAGAATGTT
GTGAATATTAATCCTGCGTCGGAAATAAGTCGTAGGGAAGGGTTTCAATCACTTGATGGATCGTTTGAGATTAAGGCGGAGAAGTTTACACGATTGGAGG
GGTGGGTTAAGTCGAGTTCAGGGAATTTGACTACTAGTATTACGCAGGAGGTTAGGCTTAGGAGCTCGATAAGGTTCAGAAAGAATGGATCTTATAAGGT
TGTCAAACAGAGTATCAAGGTGAGAAGAGAAGCGAAAGTGTTGAATGATGTGGGTGGATTGGTTAGTCGTGTTACTGTTAGGACAAAGTATCCTCTCAAA
GTGATTACTGTGACTCTTCCTGGACTGAAGAACGATACTTATATTCTTGTTACTAATGTTACCCATGAAGTGAATGAGAGGATAAGAATTGGGAAGTTGT
CGAGCCATGTTAATAACAAACAGGTTTCTAATGGTTGGATGGAGGTTAAGGATCATTCTGTTCTTTCAGGTGAAGTTATGACTAATCAAACTTACGTTTG
CAGGGATGAGTTCGGTTGCTATGTCAGGATTGTTGCAGCATTGAACGGAACACTCATCAAAGACGATTCTGCCAATGTCTGTCCATCTGTTAAGTAA
AA sequence
>Potri.010G185100.1 pacid=42798692 polypeptide=Potri.010G185100.1.p locus=Potri.010G185100 ID=Potri.010G185100.1.v4.1 annot-version=v4.1
MHPSPTLFLLLVVTASLPLARSTSPDHFFKPSSPPRSPSPSPEPSPEPEPKEYFELTHPLPGDRLTPSCVLQTINHSFANTINKPPFSTPYYPPLDCPPP
WSHVTLEFHVKSKGDQYDRVSALWLGGSELLRTSTAEPEEHGIFWNVRKDITKYSSLLVQNYLNFTLMLENIVNDIYTGVYHVNVTLYFYKDNAVKVPLT
GINQNLIAPVLQSPLFGDKSMYDPPADLIIPISASDSTKGYWFIIESELDVKFEKVRFPLNTRKVVLELYVSFHGNDEFWYSNPSNSYIRMNNLSTPRGN
GAFREVFVTIDGKLVGSEMPFPVIFTGGINPLFWEPVVAIGAFNLPSYDFDLTPFLGMLLDGKDHLFGIGVTDGIEYWLVDANLHVWLDTASTVVEAKNV
VNINPASEISRREGFQSLDGSFEIKAEKFTRLEGWVKSSSGNLTTSITQEVRLRSSIRFRKNGSYKVVKQSIKVRREAKVLNDVGGLVSRVTVRTKYPLK
VITVTLPGLKNDTYILVTNVTHEVNERIRIGKLSSHVNNKQVSNGWMEVKDHSVLSGEVMTNQTYVCRDEFGCYVRIVAALNGTLIKDDSANVCPSVK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05480 Peptide-N4-(N-acetyl-beta-gluc... Potri.010G185100
[exp]
0 1
AT5G43190 Galactose oxidase/kelch repeat... Potri.014G016200
[exp]
3.87 0.6285
AT5G58530 Glutaredoxin family protein (.... Potri.008G072200
[exp]
27.34 0.6052
AT2G46520 cellular apoptosis susceptibil... Potri.002G172700
[exp]
36.27 0.5807
AT2G33390 unknown protein Potri.008G170700
[exp]
46.63 0.5496
AT3G21060 RBL RbBP5 LIKE, Transducin/WD40 re... Potri.019G000900
[exp]
47.34 0.6036
Potri.010G212501
[exp]
58.32 0.5294
Potri.001G011401
[exp]
60.54 0.5946
AT5G15750 Alpha-L RNA-binding motif/Ribo... Potri.017G101200
[exp]
72.20 0.6025
AT5G53750 CBS domain-containing protein ... Potri.011G050500
[exp]
80.49 0.5453
AT1G04230 Protein of unknown function (D... Potri.008G160800
[exp]
83.24 0.5903

Potri.010G185100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.