Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) AT2G31820 77 / 6e-15 Ankyrin repeat family protein (.1) AT5G02620 72 / 3e-13 ATANK1, ANK1 ankyrin-like1 (.1) AT5G07840 68 / 3e-13 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) AT4G27780 71 / 5e-13 ACBP2 acyl-CoA binding protein 2 (.1) AT5G12320 66 / 1e-12 ankyrin repeat family protein (.1) AT5G53470 68 / 3e-12 ACBP1 acyl-CoA binding protein 1 (.1) AT5G61230 65 / 3e-12 PIA2, ANK6 phytochrome interacting ankyrin-repeat protein 2, ankyrin repeat protein 6, Ankyrin repeat family protein (.1) AT5G57740 68 / 5e-12 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G40160 66 / 1e-11 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G062000 [exp] 174 / 2e-48 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.002G213200 [exp] 101 / 7e-23 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 79 / 2e-16 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.015G010200 [exp] 72 / 2e-13 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.012G017700 [exp] 71 / 3e-13 AT4G27780 432 / 4e-152 acyl-CoA binding protein 2 (.1) Potri.013G042300 [exp] 71 / 7e-13 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.009G070700 [exp] 66 / 1e-12 AT5G12320 197 / 6e-66 ankyrin repeat family protein (.1) Potri.003G103400 [exp] 67 / 2e-12 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.007G145200 [exp] 69 / 3e-12 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002621 [exp] 116 / 2e-28 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10020272 [exp] 116 / 8e-28 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10007432 [exp] 88 / 9e-19 AT2G31800 69 / 3e-13 Integrin-linked protein kinase family (.1) Lus10010667 [exp] 78 / 2e-15 AT2G03430 82 / 5e-18 Ankyrin repeat family protein (.1) Lus10003748 [exp] 76 / 2e-14 AT1G07710 83 / 6e-18 Ankyrin repeat family protein (.1) Lus10018958 [exp] 68 / 4e-13 AT5G07840 228 / 3e-77 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) Lus10033816 [exp] 67 / 6e-13 AT5G07840 232 / 1e-78 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) Lus10015811 [exp] 70 / 2e-12 AT5G14230 727 / 0.0 unknown protein Lus10036990 [exp] 69 / 3e-12 AT5G14230 510 / 5e-174 unknown protein Lus10022382 [exp] 66 / 2e-11 AT4G27780 432 / 2e-152 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0556 [poplar] [flax] PapD-like PF00635 [poplar] [flax] Motile_Sperm MSP (Major sperm protein) domain CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.010G185200.1 pacid=42799288 polypeptide=Potri.010G185200.1.p locus=Potri.010G185200 ID=Potri.010G185200.1.v4.1 annot-version=v4.1 ATGGAGAGATTAGTAGAATTATCAGACACAGAGGTGCGCATAGACTTCTTGCTGTATTCCAAATGCCGAGCCACAGTACGTTTGAGGTCACTTTGTGCCA CAGCCCCAGTAGCTTTCAAAATCCAAACTTCATCTCCGCATAAGTTTCTTGTTAATCCACCAACTGGACTCATTTCTCCTCTGTCTTTCGCTACCTTCCA AATCGTCCTCAGACCTCAAAATCAACTCCCACCCACTTTCCCACGCTCTCCGTCTGACCGTTTTCTAATCAAAACGGCTCCGTTTGCCTCCAACTCGCCG TGTTCAACTCACCCCGACTCACTAGCCTCCTGGTTCTCCTCTCTCCCTCTCGACTCAACTCAGGACTTCAAACTCAAGGTTGCCTTTGTTGGACCCTTTC TTCTACGCCACGCTGTCAGCTGTGGAGATGCCGACTCAGTCAAGAATATATTGAAGAGGCAAAAGACAATTCTGTCTGAATTGACCCAGAGAGATGCTGA GTCGTTGCTCCGAGTTGCGACCGAGTTGGACAACTCGGAGGTTGTGGTGAATTTACTGCTTGAAGGCGGGTTGAAGATTGACGCATGTGTGACAGCTGGT GGGGTGGGGTCTTATCAGGTGGATCCCAGGTGGGAATCCAAGGGATGGAGTGATTTACACGTGGCAGCGGCTCTTGATCGGGCGGATGATGTTTTGGATT TGTTGAAAGGATCGGGGCCGTTGGATTTGAGAGATAAGGAGGGAAGGACACCGTTGCATTTGGCTTCTAGTAGGGGAAATATCAAGTGTGCTAAATTGTT GGTGGAATCGGATGCTGATAAGGATGCTAAGAGTAAGGATGGTAGGACAGCGTTGTATAGAGCAGCGGCTAATGGTGACCGTAGGATGGTTGAGATGTTA ATTGATGTTGGCGCGGACCCCACCATTCCAGACGATCGTGGCCGTTCAGCAATGGACGCTGCTCGTGACAAGGGCCATGAGGAGGTTGTGGAGGTTTTAC AATGTGGAGAGCTAGCACTAATGGCCGCAAGACGTGGTGAATTAGAGAGCCTCGAATCATTACTGAGAAGGGGTGCCAGCTTGAAATATCGCGATCAATA TGGTTTCACAGCCTTGCACGCAGCAGCTGTGAAGGGACACACGGACATAGTGTCGATGCTTGTTGAATTTGGAGTGGATTTAGAATGCCAGGACAATGAA GGTCATGCCCCGTTGCATTTGGCAGTGGAGGGCGGCCACATAGAAACGGTGGAGGTGTTGATCAACAGGGGAGCCAATGTTAATGCGAGGAGCAATCGAG GTGCCACCCCTCTCTACATGGCTAAAGCCATCGGTTATGATGATATTTCACAGTTTCTGGTGGATAGAGGAGCCTCCTCTTCTCCCCCCCTCTCTCTGCC TTCCTCGTCATTTCTCATGTTGCAACCATAA
AA sequence Show only first row Show all	>Potri.010G185200.1 pacid=42799288 polypeptide=Potri.010G185200.1.p locus=Potri.010G185200 ID=Potri.010G185200.1.v4.1 annot-version=v4.1 MERLVELSDTEVRIDFLLYSKCRATVRLRSLCATAPVAFKIQTSSPHKFLVNPPTGLISPLSFATFQIVLRPQNQLPPTFPRSPSDRFLIKTAPFASNSP CSTHPDSLASWFSSLPLDSTQDFKLKVAFVGPFLLRHAVSCGDADSVKNILKRQKTILSELTQRDAESLLRVATELDNSEVVVNLLLEGGLKIDACVTAG GVGSYQVDPRWESKGWSDLHVAAALDRADDVLDLLKGSGPLDLRDKEGRTPLHLASSRGNIKCAKLLVESDADKDAKSKDGRTALYRAAANGDRRMVEML IDVGADPTIPDDRGRSAMDAARDKGHEEVVEVLQCGELALMAARRGELESLESLLRRGASLKYRDQYGFTALHAAAVKGHTDIVSMLVEFGVDLECQDNE GHAPLHLAVEGGHIETVEVLINRGANVNARSNRGATPLYMAKAIGYDDISQFLVDRGASSSPPLSLPSSSFLMLQP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03430			Ankyrin repeat family protein ...		Potri.010G185200 [exp]	0	1
AT5G04440			Protein of unknown function (D...		Potri.010G230900 [exp]	3.87	0.9504
					Potri.004G050600 [exp]	4.47	0.9497
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.014G066700 [exp]	6.48	0.9429	Pt-AFO.1
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Potri.017G061600 [exp]	6.63	0.9253	FBL4,IPS1.1
AT1G13820			alpha/beta-Hydrolases superfam...		Potri.010G158800 [exp]	9.38	0.9366
					Potri.004G050700 [exp]	10.00	0.9270
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Potri.017G072800 [exp]	11.61	0.9287
AT4G24790			AAA-type ATPase family protein...		Potri.012G091700 [exp]	12.00	0.9309
AT4G18740			Rho termination factor (.1.2.3...		Potri.004G059300 [exp]	13.49	0.9114
AT3G15520			Cyclophilin-like peptidyl-prol...		Potri.001G404700 [exp]	14.83	0.9365

Compare expression of checked genes

Potri.010G185200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.