Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40270 432 / 5e-146 Protein kinase family protein (.1.2) AT3G56050 431 / 5e-145 Protein kinase family protein (.1.2) AT4G18640 379 / 1e-122 MRH1 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) AT5G45840 362 / 2e-116 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58540 347 / 9e-115 Protein kinase superfamily protein (.1.2.3) AT5G07150 315 / 2e-99 Leucine-rich repeat protein kinase family protein (.1) AT1G63430 221 / 5e-63 Leucine-rich repeat protein kinase family protein (.1.2) AT5G41180 199 / 5e-55 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G24540 136 / 4e-34 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G54590 134 / 1e-33 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072100 [exp] 918 / 0 AT2G40270 451 / 2e-153 Protein kinase family protein (.1.2) Potri.009G075400 [exp] 481 / 7e-162 AT2G40270 449 / 9e-152 Protein kinase family protein (.1.2) Potri.001G280200 [exp] 474 / 5e-159 AT2G40270 430 / 2e-144 Protein kinase family protein (.1.2) Potri.011G067400 [exp] 392 / 2e-127 AT4G18640 678 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G058100 [exp] 389 / 3e-126 AT4G18640 694 / 0.0 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Potri.001G106600 [exp] 223 / 1e-63 AT1G63430 839 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G124800 [exp] 220 / 1e-62 AT1G63430 858 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G415300 [exp] 139 / 2e-35 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.001G204000 [exp] 137 / 2e-35 AT1G52540 427 / 7e-150 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007516 [exp] 492 / 2e-166 AT5G45840 463 / 4e-155 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017439 [exp] 488 / 5e-165 AT5G45840 457 / 1e-152 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031290 [exp] 452 / 4e-151 AT4G18640 457 / 7e-153 morphogenesis of root hair 1, Leucine-rich repeat protein kinase family protein (.1) Lus10031860 [exp] 443 / 7e-148 AT5G45840 491 / 4e-166 Leucine-rich repeat protein kinase family protein (.1.2) Lus10029228 [exp] 344 / 3e-112 AT5G45840 444 / 5e-151 Leucine-rich repeat protein kinase family protein (.1.2) Lus10015277 [exp] 333 / 2e-105 AT5G45840 548 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10025400 [exp] 330 / 9e-104 AT5G45840 608 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10007281 [exp] 328 / 2e-102 AT5G45840 568 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10008486 [exp] 219 / 3e-62 AT1G63430 878 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10001489 [exp] 216 / 5e-61 AT1G63430 879 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G185300.1 pacid=42797199 polypeptide=Potri.010G185300.1.p locus=Potri.010G185300 ID=Potri.010G185300.1.v4.1 annot-version=v4.1 ATGGAGATCAAGAACTGGAAATTCAATCGGCTTGGAGTTGTAATCCTGTTTTTGCTATATCAAAATTTGATTCTCTGCTCTTCACTTAATGAAGAAGGTA TGGCGTTGTTGAGGTTGAGAGAGAGGATTGTGAGTGATCCATACGGTGCGTTGAACAGCTGGAAAATGGATTTTGGAGAGATTGATCATTGTTCCTGGTT TGGTGTTGAGTGCTCTCATGATGGCAAAGTTGTCGTTTTGAACTTGAAGGATCTTTGTCTTGAAGGAATGCTGGCACCTGAAATCACAAACCTTGTCCAC ATAAAGTCTATTATTTTACGCAACAACTCATTTACGGGGATCATTCCTGAAGGAACTGGAGAGCTGAAAGAGTTGGAAGTGCTAGATTTTGGGTACAATA ACTTCAGCGGACCACTTCCACTTGATCTTGGCAGTAATCTTTCCCTGGCAATCCTTCTGCTGGACAACAACGAACAACTCAGCAGCTTATCGCCTGAAAT TCAACATTTGGATATGCTTTCTGAATTTCAAGTGGATAAGAACCAGTTATCTAATGCAGTTAAAGGTTCATCCTGCAACAAAAGATCTATCACATGGAAT GCTGCCCATACAGAAAATGCAGTTCACAGACGACAGATGCAAAACAACCATAAACTCTTGCCTTCGACACCACCATCTCCAAAACCTGCAACACCAACTG TAACTTCTCCTCCTCCTCCTACAATGACTTCCCCTGCACCAACTCCAAGTGAGCCATTTGGAACTTCCTCTGCTCCAGATGGTTCTGCTTCACCTTCCAT TTCAGCACCAGCTCCTTCTAACTCAAGTGTTCCCAGAGTAGCATTTGAATCTTCCCCATCAAAAAAACATCAGGGTCCAATCATAGCTGGAGCTGTAGGG GGCACCTTAGTTATTCTCGTTTCAATCATCAGTATATATATTTGTAAAATCAATAAGGTTTCTGTCAATCCTTGGGCCACAGGATTGAGTGGACAGCTTC AGAAAGCATTTGTAACTGGTGTGCCAAAGCTTAAGAGATCTGAGCTTGAAGCAGGTTGTGAAGATTTTAGTAATGTAATTGGTTCTTCACCAATTGGCAC ACTATACAAAGGGACTTTGTCCAGTGGAGTTGAAATAGCCGTGCTAGCTGTGGCCTCTGTCGCAGTAACTTCTGCCAAGGATTGGTCAAGGACCCTACAA GTTCAGTTTAGGCAGAAGATCGAGAAATTATCAAAAGTGAACCACAAGAATTTTGTTAACCTTCTCGGGTACTGCGAGGAGGAGGAGCCTTTCACAAGAA TGATGGTATTCGAATATGCTCCAAATGGGACACTCTTCGAGCATTTACACGTTAAAGAATCGGAGCACTTGGATTGGGGAATGCGGCTGAGAATCGCAAT GGGCATGGCTTACTGCCTTGAGCATATGCACCAGCTGAATCCACCAATAGCTCACAACAACCTGAGCTCTTCAGACATCTCTCTAACTGAGGACTACGCA TCCAAAATCGCAGATTTCACTTTCTCAAACAACATAATTGCAACTGAGATGGAACTATCTAGCAAGAAGCTCCCAGATCTGCCGTTGGCTTGCCTGGAAA ATAATGTTTATAATTTTGGTGTCTTGTTATTTGAAATGGTTACTGGTAGGCTTCCATATTCAGTAGACAATGTCTCACTCGAAGACTGGGCATCAGACTA TTTGAGAGGGTACCAGCCCCTTAAGGAAATGATAGATCCAACTCTGGACTCCTTCGACGAGGAGAAGCTGGAGAGAATTGGTGAAGTAATACAATCTTGT GTGCATCGGGATCCAAAACGAAGACCGACAATGAGAAACGTCACTGCAAGATTAAGAGAGATAACTGCACTGACACCAGATGCAGCAATCCCAAAACTTT CTCCTCTTTGGTGGGCAGAGCTTGAAATTTTGTCCACGGAAGCTAGCTAA
AA sequence Show only first row Show all	>Potri.010G185300.1 pacid=42797199 polypeptide=Potri.010G185300.1.p locus=Potri.010G185300 ID=Potri.010G185300.1.v4.1 annot-version=v4.1 MEIKNWKFNRLGVVILFLLYQNLILCSSLNEEGMALLRLRERIVSDPYGALNSWKMDFGEIDHCSWFGVECSHDGKVVVLNLKDLCLEGMLAPEITNLVH IKSIILRNNSFTGIIPEGTGELKELEVLDFGYNNFSGPLPLDLGSNLSLAILLLDNNEQLSSLSPEIQHLDMLSEFQVDKNQLSNAVKGSSCNKRSITWN AAHTENAVHRRQMQNNHKLLPSTPPSPKPATPTVTSPPPPTMTSPAPTPSEPFGTSSAPDGSASPSISAPAPSNSSVPRVAFESSPSKKHQGPIIAGAVG GTLVILVSIISIYICKINKVSVNPWATGLSGQLQKAFVTGVPKLKRSELEAGCEDFSNVIGSSPIGTLYKGTLSSGVEIAVLAVASVAVTSAKDWSRTLQ VQFRQKIEKLSKVNHKNFVNLLGYCEEEEPFTRMMVFEYAPNGTLFEHLHVKESEHLDWGMRLRIAMGMAYCLEHMHQLNPPIAHNNLSSSDISLTEDYA SKIADFTFSNNIIATEMELSSKKLPDLPLACLENNVYNFGVLLFEMVTGRLPYSVDNVSLEDWASDYLRGYQPLKEMIDPTLDSFDEEKLERIGEVIQSC VHRDPKRRPTMRNVTARLREITALTPDAAIPKLSPLWWAELEILSTEAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40270			Protein kinase family protein ...		Potri.010G185300 [exp]	0	1
AT1G04400		FHA, AT-PHH1, C...	cryptochrome 2 (.1.2)		Potri.008G166632 [exp]	8.83	0.7313
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.005G099200 [exp]	10.95	0.6949
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Potri.003G079700 [exp]	11.35	0.7261
AT5G45540			Protein of unknown function (D...		Potri.015G116201 [exp]	13.19	0.7662
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	13.56	0.6571
AT1G67560		ATLOX6, LOX6	Arabidopsis thaliana lipoxygen...		Potri.010G057100 [exp]	19.79	0.6732
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.006G098300 [exp]	21.21	0.7014	PtrAUX1,AUX1.2
AT4G13870		WRNEXO, ATWRNEX...	Werner syndrome-like exonuclea...		Potri.017G059200 [exp]	21.90	0.6716
AT1G04520		PDLP2	plasmodesmata-located protein ...		Potri.010G065800 [exp]	23.66	0.7060
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.010G005800 [exp]	28.37	0.6371

Compare expression of checked genes

Potri.010G185300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.