Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) AT2G33560 108 / 2e-25 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT2G20635 85 / 4e-17 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071900 [exp] 952 / 0 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.005G258300 [exp] 110 / 3e-26 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.002G002900 [exp] 106 / 1e-24 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.007G139000 [exp] 87 / 5e-18 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009836 [exp] 295 / 2e-93 AT5G05510 390 / 2e-131 Mad3/BUB1 homology region 1 (.1) Lus10040947 [exp] 278 / 1e-86 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10013199 [exp] 111 / 2e-26 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 110 / 7e-26 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10033673 [exp] 88 / 3e-18 AT2G20635 620 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10017714 [exp] 86 / 2e-17 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [poplar] [flax] Mad3_BUB1_I Mad3/BUB1 homology region 1
Representative CDS sequence Show only first row Show all	>Potri.010G185500.1 pacid=42800255 polypeptide=Potri.010G185500.1.p locus=Potri.010G185500 ID=Potri.010G185500.1.v4.1 annot-version=v4.1 ATGGAAACAAAAAACTCAACAACCCACAATGATCTCTTCTCTTCTTTAATATCAGACATCAAATCTTACTCAGGCAATGATCCCCTTCTCCCTTGGCTCC GGGGGATTAAGAAAATGAAGGATTGCCTGCCTCCGAATGCACTGAAACAAAAGCTGCCTCGTTTTCTGCAAAAATGCACGCAGAGTTTTGCATCTGATAG GCGTTACAGGAATGACCCGCGCTACCTTCGTGTCTGGTTACAGCTGATGGATTATGTGAGTGATCCAAGAGCGCTGTTGAGTACCATGGAAATGAATAGC ATTGGAACGAAGCGGTCATTATTCTACCAGGCTTACGCTCTTTATCACGAGAAGATGAAGAACTTTGAGGAGGCTGAGAACATGTACCGTTTAGGGGTGC AGAACCTTGCCGAGCCTGTTGATGAATTGCAGAAATCATACGAACAATTCCTTCATCGCATGGAGAGACACAAGAAAAAGAACATCAAGCGCCAGATAGG AAGAAGTGGCAAAAGACCTCTATCTTCCAGGAAGTCTGAAGAGAACAATGAGAATGTATACAGCATTGAGGATAGGCCTAAACAGATACCGGACAGGAGT TCTCAGAATGTGAAGCCAATGAAGGAATCTAACCATGTTGGGGTTTCAGGAAATTCACGTGAAGATGGCTTGGGTAGTGATCTGTTCAGGAAGAAGGGAC ATGTGAAAAAGATTGGACAGAGAGATGTATCCAAGCAGCAAAAGAATATAGGAGAGTCGGATGAAGCCAAGACGCGTCACAGTGATGATACAGTTGTGGT AAAGTTTGTAGACACTGCAATAGTTGGAAAGCAAGAAGCAGAAGATGCCTGCCATCATGGACTGGTGGACCCTACAATAAATATGAAGGAAGCCATGAAT GCCATCAATGGCATGTTTCGAGAACCTTTAGAGACCTCTCCAGTAAATAGATCACGCATAAGTCGACCAAAAGAAGAGTGTAGTTTGAACAATGGATTTG ATGTATTTATTGATGAAAACTTGGACAGTGGAACTGATTCATCACTTCAAAAAGAAGAAGCGGGTATTTCCCTGATGGTGCATGGTAGAGCTCAAATCCC CCAGACTCACCAAGAACCATTCCAAATATTCATTGATGATGAAGAAAGCAATGAAAATGGCGACAGAACTTATGATAATAAATTGGAGGAGAGTAAGACC CAGAATCTGGCAGACGGTTCTTGCTCATCCATTTTACCTTTAAATGCTTTTGTCTTCCCAAGTCCGAAGGATCTTCCATCTGAAAGCTCTGATTATATGA ATTCAGAGAGCTCACCTCGAATAAAACTTAGAGAGGATACAGTTGTTCACAGGTTCGTTGGGTCTACCATCTTAGATGAGCCGGAGGTGGAAAATGTTTG CCACCATGGATTAGTAGACCCTACAATTAACTTGAAGGAGGCTATGGATGATATTAATAACATGTTTGGGAAGCCAATAGATTTTATAAGAACCAAGAGA CCAAAGAAGCAAGATAAAGCCCCTGTTAGGAAACAAGATCTTTGTGGGTTTACAATACTTCCTGATGATGATTCAGAGCATCTACAAGGACAGCCACCAC CCAGGTCATCCAGAGTAAGCAACAGAGATTTGTTTGAGCCGACAGCGTTTACAAAAGAGGCAATGGATGACATAAATAAAATGTTTGGAAAGCTATTGGA CTTTTAG
AA sequence Show only first row Show all	>Potri.010G185500.1 pacid=42800255 polypeptide=Potri.010G185500.1.p locus=Potri.010G185500 ID=Potri.010G185500.1.v4.1 annot-version=v4.1 METKNSTTHNDLFSSLISDIKSYSGNDPLLPWLRGIKKMKDCLPPNALKQKLPRFLQKCTQSFASDRRYRNDPRYLRVWLQLMDYVSDPRALLSTMEMNS IGTKRSLFYQAYALYHEKMKNFEEAENMYRLGVQNLAEPVDELQKSYEQFLHRMERHKKKNIKRQIGRSGKRPLSSRKSEENNENVYSIEDRPKQIPDRS SQNVKPMKESNHVGVSGNSREDGLGSDLFRKKGHVKKIGQRDVSKQQKNIGESDEAKTRHSDDTVVVKFVDTAIVGKQEAEDACHHGLVDPTINMKEAMN AINGMFREPLETSPVNRSRISRPKEECSLNNGFDVFIDENLDSGTDSSLQKEEAGISLMVHGRAQIPQTHQEPFQIFIDDEESNENGDRTYDNKLEESKT QNLADGSCSSILPLNAFVFPSPKDLPSESSDYMNSESSPRIKLREDTVVHRFVGSTILDEPEVENVCHHGLVDPTINLKEAMDDINNMFGKPIDFIRTKR PKKQDKAPVRKQDLCGFTILPDDDSEHLQGQPPPRSSRVSNRDLFEPTAFTKEAMDDINKMFGKLLDF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05510			Mad3/BUB1 homology region 1 (....		Potri.010G185500 [exp]	0	1
AT2G45700			sterile alpha motif (SAM) doma...		Potri.006G218300 [exp]	1.41	0.8769
AT1G20720			RAD3-like DNA-binding helicase...		Potri.002G008700 [exp]	2.44	0.8731
AT3G53320			unknown protein		Potri.016G085600 [exp]	8.18	0.8807
AT2G41620			Nucleoporin interacting compon...		Potri.015G026200 [exp]	8.66	0.8493
AT1G16330		CYCB3;1	cyclin b3;1 (.1)		Potri.008G083200 [exp]	15.36	0.8677
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	15.81	0.8094	Pt-CYCB2.2
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.017G149100 [exp]	22.80	0.8272
AT4G01730			DHHC-type zinc finger family p...		Potri.002G186800 [exp]	24.85	0.8420
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	26.58	0.8272
AT3G16060			ATP binding microtubule motor ...		Potri.001G182300 [exp]	30.00	0.7913

Compare expression of checked genes

Potri.010G185500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.