Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05520 651 / 0 Outer membrane OMP85 family protein (.1) AT3G11070 631 / 0 Outer membrane OMP85 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071800 [exp] 902 / 0 AT5G05520 626 / 0.0 Outer membrane OMP85 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040946 [exp] 652 / 0 AT5G05520 627 / 0.0 Outer membrane OMP85 family protein (.1) Lus10009835 [exp] 647 / 0 AT5G05520 625 / 0.0 Outer membrane OMP85 family protein (.1) Lus10007514 [exp] 635 / 0 AT5G05520 600 / 0.0 Outer membrane OMP85 family protein (.1) Lus10017441 [exp] 627 / 0 AT5G05520 597 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0193 [poplar] [flax] MBB PF01103 [poplar] [flax] Omp85 Omp85 superfamily domain CL0191 [poplar] [flax] POTRA PF07244 [poplar] [flax] POTRA Surface antigen variable number repeat
Representative CDS sequence Show only first row Show all	>Potri.010G185600.1 pacid=42796895 polypeptide=Potri.010G185600.1.p locus=Potri.010G185600 ID=Potri.010G185600.1.v4.1 annot-version=v4.1 ATGGCAAAACCCGAAGACGACTTGTCCGACCCGGTCGTACGAAACCATAACAATGACGAAGAAGAAGAAGAAGAAGGCGAACAAAACGACGACATCGAGG ACGAGGCCGAGGACGAGGACGAGGAAGAGGACAAAGACCTCGAATCCCAAAAGGCAAAGCTCCGAAACAGTTTTCAGAATTTCTTTAGCCGGATACAACA CGAATCGGTCCCAATTCGTGTCCACGATGTGGTAATCAAAGGGAACACGAAAACTAAAGACTATTTGATTGAAGCACTAACGGCGTCGCTTAAAGATGCG TCTACTATTCAAGAGCTGTTTGCGGCTTCGAGTGAAGTGAATTTTAGGTTACAAGCGCTTGAGATTTTTGATTCGGTCAAGATCACGCTTGATTCGGGCC CACCGGAGTTGCCTGGCACTGCTAATGTGATTGTCGACGTTGTAGAAACCAGGAGCCCTCTCTTGGGTGAAATTGGTGTTTTCAACAAAGGCGAGGCGTC ATCATCATCGTTGGAGGGTACACTAAAGTACAAAAACATATTTGGTTATGGGGATCTTTGGGATGGTGCTCTGGCATATGATTGTGACCGCAAGGCAGAG GTAAGTGCTGGCGTGTTTTTGCCAAGATTCAAAGGACTTGTGACCCCGGTAACAGCACGATTATTCCTGCAATCTCAAGACTGCCTTAAGTTTTCCTCTT TCAAAGAGCGATCACTGGGGCTCTCTCTTGGATTATTCTCAACCCGGAACCATGACTTGGTGTACAATCTTGCATGGCGTACCTTGACAGATCCATCACG AATGGCTTCGAGTTCAATAAGGAGGCAGCTTGGTCATGGTTTACTTTCATCTTTGAAGTACACATTTAAGATTGACAGGAGAAATTCACCTCTGAGGCCA ACACATGGATTTGCTTTTGTTTCTAGTACCCAAATTGGTGGCCTTGCCCCTGATAGTCGTAGCTTACGATTTTTGCGCCAGGAGCTCGATCTTCGTTGTG CTATACCTCTTGGATTTTACCGTTCTGCACTGAACTTGGGGATATCTGCTGGTGTTGTTTTTCCATGGGGATCTGGATTTTCAAGCATGCCTTCACCACT GCCAGAAAGATTCTTCCTTGGTGGCAACTTATCTCCAGTTTGCACTTTGGGTGGCCCGACATCATTATGGGGGTTTAGGACAAGAGGTCTGGGCCCTACT GAGCCTCGAAGGCAATTTCGAAGTAACCCAGCCAATGAGAACACTGATTCTGGAAGGGATCATCTTGGAGGAGATCTTGCTCTTGCTGTGTTTGCAGATT TTTCTTTTGATTTTCCATCAAAGTGGTTAAGTGCAAAAGGAATCCATGGACACTTTTTTGTATCTGCTGGGAATGTCGAAAAACTAACTGAAAATGCATA CCGGAATTTTTCTTTACGGAAGTTCACAGAATCATTTCGTAGCTCTGTTGGAGTTGGAGTTGTTATTCCTACAAATCTCTTCCGAATGGAGTTGAATTAT TGCTACATCTTGAAGAAATTTGGTGAGGACTGTGGCAAGTCAGGGTTCCGTGTCAGCTTCGCTTCTCCCTCATAG
AA sequence Show only first row Show all	>Potri.010G185600.1 pacid=42796895 polypeptide=Potri.010G185600.1.p locus=Potri.010G185600 ID=Potri.010G185600.1.v4.1 annot-version=v4.1 MAKPEDDLSDPVVRNHNNDEEEEEEGEQNDDIEDEAEDEDEEEDKDLESQKAKLRNSFQNFFSRIQHESVPIRVHDVVIKGNTKTKDYLIEALTASLKDA STIQELFAASSEVNFRLQALEIFDSVKITLDSGPPELPGTANVIVDVVETRSPLLGEIGVFNKGEASSSSLEGTLKYKNIFGYGDLWDGALAYDCDRKAE VSAGVFLPRFKGLVTPVTARLFLQSQDCLKFSSFKERSLGLSLGLFSTRNHDLVYNLAWRTLTDPSRMASSSIRRQLGHGLLSSLKYTFKIDRRNSPLRP THGFAFVSSTQIGGLAPDSRSLRFLRQELDLRCAIPLGFYRSALNLGISAGVVFPWGSGFSSMPSPLPERFFLGGNLSPVCTLGGPTSLWGFRTRGLGPT EPRRQFRSNPANENTDSGRDHLGGDLALAVFADFSFDFPSKWLSAKGIHGHFFVSAGNVEKLTENAYRNFSLRKFTESFRSSVGVGVVIPTNLFRMELNY CYILKKFGEDCGKSGFRVSFASPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G05520			Outer membrane OMP85 family pr...		Potri.010G185600 [exp]	0	1
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.010G126600 [exp]	3.16	0.8225
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	17.74	0.7857
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105000 [exp]	20.49	0.7450
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	20.97	0.7554	CMDH.2
AT2G46540			unknown protein		Potri.002G173101 [exp]	22.49	0.7980
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.009G062200 [exp]	26.00	0.7811	Pt-ANT2.1
AT5G10160			Thioesterase superfamily prote...		Potri.003G020300 [exp]	29.22	0.7532
AT3G07010			Pectin lyase-like superfamily ...		Potri.002G238800 [exp]	29.49	0.7779
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Potri.017G136133 [exp]	34.56	0.6565
AT2G31440			unknown protein		Potri.007G127400 [exp]	35.49	0.6866

Compare expression of checked genes

Potri.010G185600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.