Plant FIBer expression Database

Potri.010G185800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56040 1150 / 0 UGP3 UDP-glucose pyrophosphorylase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007512
[exp]
1211 / 0 AT3G56040 1101 / 0.0 UDP-glucose pyrophosphorylase 3 (.1)
Lus10017443
[exp]
1178 / 0 AT3G56040 1100 / 0.0 UDP-glucose pyrophosphorylase 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01704 UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence
>Potri.010G185800.1 pacid=42799663 polypeptide=Potri.010G185800.1.p locus=Potri.010G185800 ID=Potri.010G185800.1.v4.1 annot-version=v4.1
ATGGCTAAAACAAATGCCGCAACTTCATCATCCACTAACATACTTCTTCGTTATAACAACAAAAAAAGAAATGATTTTCTCTTCTCTTTCAACTCTATTA
ATCTTTTCAACAAATCTCTCCCCTTCAAGAAACCTTCTCTTCATCCTCCTCTACTCTCACTCTCTTCCTCTCCGTCCAAGCCCCTGACCACGCGAGTTTC
CATTGCGCCTGTTGAGTACGCGCCACCTGCACCTGACTCTTTCAATTTCCACCAAGAAATCTCTCGACTCCAATCTCTCCGTTCAAAGCTCGCTCACTCC
AAAACATTAAACGGCAAACAATCAGTACTAAACGACGACTCACGCGTCAAACGGTTTTTCAAAATTGGAGGAGTTTCTAGGTTTCTGGATTCAATTAATT
TAACCTCTCGTGAGTTGTTTTTGCTCAAGTGTTTGGTCGCCGCTGGTCAAGAGCACGTGGTTAGTTTGGAGGGATTCGAGTTGGTTGAGAGTGAAGCGGT
GGAGTCTGTTAGGACTTCCGTTAAGAGCGCGCTTTATAGTTTAGTGGAGATTATTGAGGGGTTTGATTTGAGTGATAATGGTAATAAAGGATTAGAGAGG
ATTAATTATGGGGAGAATTTGACTGATGAGGAGATCAAGGACTTGAAGAAGTTGCTGAAGAGTTTAGGCGAGGTCGAGGAGTTTTATGATTGTATTGGAG
GTGTCATTGGATATCAGATAATGGTGCTGGAACTTCTTTTCCAGTCAACATTCAAAAAGCAGACTACAAATTGGTCCCAGCACATAAAAGAATCAATGGA
ATGCCAGTTTTTGGAAATTCACGCTCCTAGTGGACTTGACCTTTCAAAAAATACAGAGTATGCATCTCAAGCAGCTCTGTGGGGAATTGAGGGTTTGCCA
GATCTAGGAGAAATTTATCCTCTTGGTGGTTCTGCTGACCGGCTTGGTTTGGTTGACCCTGACACTGGCGAATGCCTTCCTGCTGCCATGCTTCCTTATT
GTGGACGGACCTTATTGGAAGGTCTTATAAGAGATCTCCAGGCTAGAGAGTTCTTGTACTTCAAGATATATGGAAAGCAGTGCATTACCCCTGTAGCAAT
CATGACAAGTTCTGCTAAGAATAACCATGAGCATATCACTTCTCTTTGTGAAAGGCTGAGCTGGTTTGGAAGAGGTCAATCCAGTTTCCAACTTTTTGAA
CAGCCTCTTGTTCCAGCTATTAGTGCTGAAGATGGGCAGTGGTTGGTTACGAAACCATTTGCACCTGTATGCAAGCCCGGTGGACATGGTGTGATTTGGA
AACTTGCTTATGACAAAGGCATCTTCGAGTGGTTTTATGATCATGATAGAAAAGGTGCTACTGTGCGACAAGTCAGTAATGTTGTTGCTGCCACGGATTT
GACCCTTTTGGCACTGGCAGGGATTGGCTTACGTCACAGAAAGAAACTGGGGTTCGCCTCTTGTAAGCGCAACTCAGGGGCTACTGAAGGAATTAATGTC
CTTATTGAAAAGAAGAATCTTGATGGGCAGTGGGCTTATGGCTTGTCATGCATTGAATACACCGAGTTTGATAAGTTTGAAATCACAGGCGGTCCTTGTT
CAACTAACGGTTTGCAGGCAGAGTTCCCTGCCAATACAAACATTCTGTATGTGGATTTACCTTCTCTGGAGTTAGTTGCATCAAGTAACAATGAAAAAAG
TTTGCCAGGCATGGTTCTGAATACAAAAAAGCCAATTGTATACATGGACCATTATGGGAACTGTCACAGTGTCTATGGTGGTCGGCTGGAATGCACAATG
CAAAATATTGCAGATAATTTCACAAACACCTATTTATCCAGATGTTACAAGGGTGTGGAAGATAAGCTGGATACCTTTATTGTGTATAATGAGCGAAGAA
GGGTTACTTCATCTGCTAAGAGGAAAAGAAGACATTCTGACAATACCTTGCATCAGACTCCAGATGGTGCACTCTTGGATATCTTACGGAATGCCTACGA
TCTTCTTTCACATTGTGATATAGAGCTTCCTCAGATTGAAGGTAATGATAAATATGTTGAGTCTGGACCACCATTTCTCATCTATCTGCATCCTGCTCTT
GGCCCACTTTGGGAGGTCACAAGACAAAAGTTTAATGGAGGATCCATATCTAAGGGTTCTGAGCTACAAATTGAGGTCGCAGAGTTCTCATGGAGAAATG
TTCAGCTTGATGGAAGCTTGATCATTATTGCTGAAAATGTTATGGGCTCAACCAGGATTGATCCCAATGGTGAACCAATATTACAGTATGGGAACAGGTG
TGGAAGATGTAGACTGCAAAATGTCAAAGTTGTGAACAAAGGGATTAACTGGAGTTTTGGAGACAATATATACTGGAAGCATGATGTGCAACGGTTTGAG
GCATTGAAGGTTATTCTGCATGGAAATGCTGAATTTGAGGCTGACAACGTTACCATACAGGGAAATCAGATATTTGAAATACCAGATGGCTACAAAATGA
AGATAACATCAGGAGATTCAGGTTTGCAAGTCCAGCTCAACCCTTTAGAACAAAAAATAATGGATAGTGGAAGCTGGCACTGGAATTACAAGATACATGG
CTCGCATATTCAGTTGGAATTGGTAGAGACGTAA
AA sequence
>Potri.010G185800.1 pacid=42799663 polypeptide=Potri.010G185800.1.p locus=Potri.010G185800 ID=Potri.010G185800.1.v4.1 annot-version=v4.1
MAKTNAATSSSTNILLRYNNKKRNDFLFSFNSINLFNKSLPFKKPSLHPPLLSLSSSPSKPLTTRVSIAPVEYAPPAPDSFNFHQEISRLQSLRSKLAHS
KTLNGKQSVLNDDSRVKRFFKIGGVSRFLDSINLTSRELFLLKCLVAAGQEHVVSLEGFELVESEAVESVRTSVKSALYSLVEIIEGFDLSDNGNKGLER
INYGENLTDEEIKDLKKLLKSLGEVEEFYDCIGGVIGYQIMVLELLFQSTFKKQTTNWSQHIKESMECQFLEIHAPSGLDLSKNTEYASQAALWGIEGLP
DLGEIYPLGGSADRLGLVDPDTGECLPAAMLPYCGRTLLEGLIRDLQAREFLYFKIYGKQCITPVAIMTSSAKNNHEHITSLCERLSWFGRGQSSFQLFE
QPLVPAISAEDGQWLVTKPFAPVCKPGGHGVIWKLAYDKGIFEWFYDHDRKGATVRQVSNVVAATDLTLLALAGIGLRHRKKLGFASCKRNSGATEGINV
LIEKKNLDGQWAYGLSCIEYTEFDKFEITGGPCSTNGLQAEFPANTNILYVDLPSLELVASSNNEKSLPGMVLNTKKPIVYMDHYGNCHSVYGGRLECTM
QNIADNFTNTYLSRCYKGVEDKLDTFIVYNERRRVTSSAKRKRRHSDNTLHQTPDGALLDILRNAYDLLSHCDIELPQIEGNDKYVESGPPFLIYLHPAL
GPLWEVTRQKFNGGSISKGSELQIEVAEFSWRNVQLDGSLIIIAENVMGSTRIDPNGEPILQYGNRCGRCRLQNVKVVNKGINWSFGDNIYWKHDVQRFE
ALKVILHGNAEFEADNVTIQGNQIFEIPDGYKMKITSGDSGLQVQLNPLEQKIMDSGSWHWNYKIHGSHIQLELVET

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G56040 UGP3 UDP-glucose pyrophosphorylase ... Potri.010G185800
[exp]
0 1
AT4G28080 Tetratricopeptide repeat (TPR)... Potri.018G102500
[exp]
1.73 0.9588
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.010G160200
[exp]
3.46 0.9439
AT1G14590 Nucleotide-diphospho-sugar tra... Potri.008G142200
[exp]
3.60 0.9246
AT4G17300 ATNS1, NS1, OVA... ovule abortion 8, Class II ami... Potri.017G028800
[exp]
3.87 0.9464 NS1.2
AT1G64430 Pentatricopeptide repeat (PPR)... Potri.003G140800
[exp]
4.24 0.9399
AT3G22104 Phototropic-responsive NPH3 fa... Potri.017G041600
[exp]
4.47 0.9279
AT4G04350 EMB2369 EMBRYO DEFECTIVE 2369, tRNA sy... Potri.011G009600
[exp]
5.09 0.9470
AT1G08070 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSIN... Potri.013G103600
[exp]
6.70 0.9405
AT5G38510 Rhomboid-related intramembrane... Potri.017G112900
[exp]
9.16 0.9378
Potri.006G164050
[exp]
11.22 0.9319

Potri.010G185800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.