Plant FIBer expression Database

Potri.010G186750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G186750.1 pacid=42800039 polypeptide=Potri.010G186750.1.p locus=Potri.010G186750 ID=Potri.010G186750.1.v4.1 annot-version=v4.1
ATGATTAATTCACAAGAGATTGTCCTTTTTGTTTCGGTTGCCGAACTCCATCGTCCTCCATTGCAATCTGTTGCCCTTGAACATAATTGTAAAGGTAAAG
ACATGCGATCAAGAAGAAGATGCATGATGGGACACATAAGCATGAAGTCAGTTTCAATCAGTAGAGCAAGTGGTTGTGGGCTCAATGGTACTTCATCTCT
GAAGAAACTTACACAAGGGCAAGGCAAAAGAAAACATGTTATGCAGAAGTTGGAGCAAATAAAACAGATAATTACTAGTCAAGCTGTGCACAATTTGAGA
AGTTTAGAACTGGATTCTGTATGA
AA sequence
>Potri.010G186750.1 pacid=42800039 polypeptide=Potri.010G186750.1.p locus=Potri.010G186750 ID=Potri.010G186750.1.v4.1 annot-version=v4.1
MINSQEIVLFVSVAELHRPPLQSVALEHNCKGKDMRSRRRCMMGHISMKSVSISRASGCGLNGTSSLKKLTQGQGKRKHVMQKLEQIKQIITSQAVHNLR
SLELDSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G186750
[exp]
0 1
AT5G53540 P-loop containing nucleoside t... Potri.012G013580
[exp]
1.73 0.8617
AT2G24100 ASG1 ALTERED SEED GERMINATION 1, un... Potri.005G014600
[exp]
3.00 0.8437
AT5G53540 P-loop containing nucleoside t... Potri.012G015670
[exp]
3.16 0.8455
AT3G46920 Protein kinase superfamily pro... Potri.006G190200
[exp]
3.87 0.8172
AT5G46460 Pentatricopeptide repeat (PPR)... Potri.001G267100
[exp]
5.91 0.8067
AT1G14200 RING/U-box superfamily protein... Potri.019G086601
[exp]
7.41 0.7916
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Potri.009G106200
[exp]
8.94 0.7953 SQN.1
AT2G42490 Copper amine oxidase family pr... Potri.015G082900
[exp]
10.19 0.7856
AT3G10120 unknown protein Potri.006G213100
[exp]
11.22 0.7772
AT2G46780 RNA-binding (RRM/RBD/RNP motif... Potri.015G005500
[exp]
11.83 0.7801

Potri.010G186750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.