Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11130 3103 / 0 Clathrin, heavy chain (.1) AT3G08530 3096 / 0 Clathrin, heavy chain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G070600 [exp] 3244 / 0 AT3G11130 3139 / 0.0 Clathrin, heavy chain (.1) Potri.009G073300 [exp] 3103 / 0 AT3G11130 3006 / 0.0 Clathrin, heavy chain (.1) Potri.001G278800 [exp] 3088 / 0 AT3G11130 2982 / 0.0 Clathrin, heavy chain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037845 [exp] 1425 / 0 AT3G08530 1395 / 0.0 Clathrin, heavy chain (.1) Lus10030393 [exp] 1376 / 0 AT3G08530 1518 / 0.0 Clathrin, heavy chain (.1) Lus10028976 [exp] 1246 / 0 AT3G08530 1258 / 0.0 Clathrin, heavy chain (.1) Lus10007499 [exp] 1105 / 0 AT3G08530 1152 / 0.0 Clathrin, heavy chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00637 [poplar] [flax] Clathrin Region in Clathrin and VPS CL0020 [poplar] [flax] TPR PF01394 [poplar] [flax] Clathrin_propel Clathrin propeller repeat CL0020 [poplar] [flax] TPR PF09268 [poplar] [flax] Clathrin-link Clathrin, heavy-chain linker CL0020 [poplar] [flax] TPR PF13838 [poplar] [flax] Clathrin_H_link Clathrin-H-link
Representative CDS sequence Show only first row Show all	>Potri.010G186900.1 pacid=42797859 polypeptide=Potri.010G186900.1.p locus=Potri.010G186900 ID=Potri.010G186900.1.v4.1 annot-version=v4.1 ATGGCCGCGGCTAACGCCCCGATCACCATGAAGGAAGTCTTAACTTTACCGGCTATCGGGATTAGTCCTCAGTTTATTACGTTTACAAATGTAACGATGG AATCAGACAAGTATATATGTGTACGGGAAACAGCGCCACAAAATAGTGTTGTAATTATCGATATGAACATGCCAATGCAGCCATTGAGACGCCCTATCAC TGCAGATTCTGCTCTCATGAATCCAAATTCTAGAATCCTTGCTTTGAAAGCCCAACTTCCGGGAACTACTCAGGATCACTTACAAATATTTAACATCGAG ATGAAAGCAAAAATGAAATCATACCAGATGCCTGAGCAGATTGTCTTTTGGAAGTGGATAACCCCTAAGATGCTGGGCCTGGTTACACAGACATCAGTTT ATCATTGGTCTATTGAAGGTGATTCTGAACCAGTGAAGATGTTTGAGAGAACTGCTAATTTGCAAAGCAATCAGATTATAAACTACAAATGTGACCCTTC TGAGAAATGGTTAGTTTTGATTGGAATTGCTCCTGGCTCACCTGAGCGGCAACAATTGGTTAAAGGGAACATGCAACTTTTCTCTGTGGATCAACAACGT AGCCAAGCTCTTGAAGCACATGCTGCATCATTTGCACAATATAAGGTTCCAGGAAACGAGAACCCTTCCACTCTGATTTCTTTTGCCACAAAATCTTTTA ATGCTGGGCAGATTACATCGAAGTTGCATGTTATTGAGCTTGGTGCCCAGCCAGGGAAGCCATCATTTACGAAGAAACAGGCAGATCTGTTCTTTCCTCC TGATTTTGCTGATGACTTTCCTGTGGCAATGCAGATATCCCACAAATACAGTTTGATTTATGCAATCACGAAGCTTGGGCTGCTATTTGTTTATGATTTG GAGACAGCTACTGCAGTATACCGAAACAGAATTAGTCCAGATCCAATATTTTTGACAGCTGAGGCTTCAACGGTGGGAGGGTTTTATGCCATTAATAGGC GAGGCCAGGTGTTGTTGGCTACTGTAAATGAAGCAATGATTGTGCCATTTGTTAGTGGCCAGTTGAATAATCTGGAGCTTGCTGTCAATCTAGCCAAAAG AGGAAACCTTCCTGGTGCTGAGAATCTGGTTGTCCAGCGTTTCCAAGAATTATTCGCTCAAACAAAGTATAAAGAAGCTGCTGAGCTTGCTGCTGAGTCA CCACAAGGCATTCTTCGAACTCCTGACACAGTTGCCAAGTTTCAGAGTGTTCCAGTGCAACCTGGGCAAACCCCTCCCTTATTGCAATACTTTGGGACCC TTTTAACTAGAGGAAAGCTTAATGCATTTGAGTCATTGGAATTGTCCCGCCTTGTGGTCAATCAGAACAAAAAGAATCTTTTGGAGAACTGGTTGGCAGA GGACAAGTTGGAGTGTACTGAGGAACTGGGAGACCTTGTGAAGACAGTGGATAATGATCTTGCTCTGAAAATATATATTAAAGCTAGGGCAACCCCTAAA GTTGTTGCAGCTTTTGCTGAGAGAAGGGAGTTTGACAAAATTTTGATATACTCGAAGCAGGTTGGCTATGCTCCTGACTATTTATTCCTTCTGCAAACAA TTCTCCGTACAGATCCACAGGGTGCTGTTAACTTTGCTTTGATGATGTCCCAAATGGAAGGTGGCTGTCCAGTTGACTACAATACCATTACTGATCTCTT TCTTCAGAGGAACTTGATCCGTGAGGCAACAGCCTTTCTGTTGGATGTTTTGAAGCCAAATTTAGCAGAGCATGGTTACCTCCAAACAAAGGTTCTGGAG ATAAATCTGGTAACATTTCCTAATGTAGCTGATGCTATTCTAGCCAATGGGATGTTTAGCCACTATGATCGTCCTCGTATTGCTCAACTCTGTGAAAAAG CTGGTCTTTACATCCGAGCCCTGCAGCATTATACGGATTTGCCAGATATTAAACGTGTGATCGTGAATACACATGCAATAGAGCCACAGGCACTTGTTGA GTTTTTTGGCACTCTTTCACGAGAATGGGCTCTGGAGTGCATGAAGGATCTCTTACTGGTTAATCTAAGAGGCAACCTTCAGATAATTGTTCAGACTGCC AAGGAATATTGTGAGCAGTTGGGTGTTGATGCATGCGTAAAACTTTTCGAACAATTCAAATCATATGAAGGGTTGTACTTTTTCTTGGGGTCATATTTGA GTTCCAGCGAGGATCCTGATATACATTTTAAGTACATCGAGGCAGCTGCTAGAACCGGACAAATAAAGGAGGTTGAGCGTGTTACTAGGGAGTCAAATTT TTATGATCCTGAAAAGACAAAGAACTTTCTGATGGAAGCCAAGCTTCCGGATGCAAGGCCTCTAATAAATGTCTGTGACCGTTTTGGTTTTGTTGCTGAT CTCACACACTACCTCTATTCAAGCAACATGCTTCGTTATATAGAGGGTTATGTTCAAAAGGTGAACCCAGGGAATGCTCCTTTAGTTGTCGGGCAGCTGT TAGATGATGAATGCGCCGAAGACTTTATCAAGGGCCTTATTCTTTCTGTCCGTTCTTTGCTTCCAGTTGAGCCCCTTGTGGAGGAATGTGAGAAGAGAAA TCGACTTCGTTTGCTCACTCAGTTCTTGGAACATCTTGTGAGTGAGGGAAGCCAAGATGTACATGTTCACAATGCTCTTGGTAAAATCATCATTGATAGC AATAACAACCCAGAACACTTCCTCACCACCAATCCTTACTATGATTCCCGGGTTGTGGGCAAGTATTGTGAGAAACGTGATCCCACCCTTGCTGTTGTTG CTTACCGGAGAGGACAATGTGATGAAGAACTCATCAATGTCACAAATAAGAACTCTTTGTTCAAGTTGCAAGCCAGATATGTGGTTGAAAGGATGGATGG TGATCTTTGGGAGAAGGTTCTGAATCCTGAAAATGAATACCGAAGACAGCTTATTGATCAAGTTGTATCTACTGCTTTGCCGGAAAGTAAGAGCCCAGAG CAAGTTTCTGCTGCTGTTAAAGCTTTCATGACTGCTGATCTGCCCCATGAATTGATTGAGCTTCTTGAGAAGATTGTGCTCCAAAACTCTGCATTCAGTG GAAATTTCAATCTCCAAAACCTACTTATCTTGACAGCAATTAAGGCTGATCCTTCTAGGGTTATGGATTACATTAATAGATTAGATAACTTTGATGGACC TGCTGTTGGGGAAGTGGCAGTTGAAGCTCAGCTTTACGAGGAAGCATTTGCAATTTTCAAGAAGTTCAACTTGAATGTTCAGGCTGTTAATGTTTTATTG GATAACATCCAAAGCATTGACCGTGCCGTGGAGTTTGCATTCCGTGTTGAAGAAGATGCTGTTTGGAGCCAGGTGGCCAAGGCCCAACTCAGAGAGGGCC TTGTGAGTGAAGCAATTGAGTCATTTATTCGTGCAGATGACGCTACTCAATTCCTGGAAGTCATTCGTGCTGCTGAGGATGCAAATGTCTATCATGATTT GTTGAAGTACCTTCTCATGGTTAGGCAGAAGACAAAAGAGCCAAAGGTGGATAGTGAGCTTATTTTTGCATATGCAAAGATTGATAGGTTGAGTGACATT GAGGAGTTCATTCTCATGCCAAATGTGGCAAATCTCCAAAATGTTGGCGATCGCTTATATGATGAAGCTCTTTATGAGGCTGCAAGAATTATATTCCAAT TTATAGCAAACTGGGCCAAGTTGGCAAGCACACTAGTGAAGTTGAAACAGTTCCAAAGTGCTGTTGATGCAGCTCGGAAAGCCAACAGTGCCAAGACATG GAAGGAAGTTTGCTTTGCTTGTGTTGATGCAGAGGAGTTCCGTCTGGCTCAGATATGTGGTCTTAACATCATTATACAGGTGGATGATTTGGAGGAGGTC AGCGAATATTACCAGAACAGAGGATACTTCAATGAATTGATCTCTCTCATGGAGAGTGGTTTAGGTTTAGAACGTGCACACATGGGGATTTTCACAGAGT TGGGAGTGCTGTATGCTAGATATCGTCCTGAGAAACTCATGGAGCACATTAAATTGTTCTCAACCCGTCTCAACATTCCCAAGCTTATCCGAGCATGTGA TGAACAGCAACACTGGAAGGAACTTACCTATTTGTACATTCAATATGATGAATTTGATAATGCTGCAACTACCATTATGAACCATTCTCCGGAGGCATGG GATCACATGCAATTCAAAGATGTTGCTGTCAAAGTTGCTAATGTAGAGCTATATTATAAGGCCGTGCATTTCTACTTGCAAGAACATCCTGATCTTATCA ATGATCTTCTCAATGTGCTGGCACTTCGTGTGGACCATACTCGTGTTGTTGACATTATGCGGAAGGCTGGTCATTTGCTTCTTGTGAAGCCATACATGAT TGCAGTTCAGAGCAACAACGTGTCTGCTGTGAATGAGGCTTTGAATCAAATTTATGTAGAAGAGGAGGACTATGAAAGATTGCGTGAATCAATTGATTTG CATGATAACTTTGATCAGATTGGCCTTGCACAGAAGATTGAGAAACATGAGCTTCTTGAAATGAGGCGTGTGGCTGCGTACATTTACAAGAAGGCAGGAA GATGGAAGCAATCCATTGCATTGTCAAAGAAAGATAACCTTTATAAAGATGCCATGGAGACAGCATCACAGTCTGGTGATCGTGAACTTGCAGAGGAGTT GCTGGTTTATTTCATTGAACAGGGCAAGAAGGAATGCTTTGCATCGTGCCTCTTTGTTTGTTATGATTTGATTCGGCCAGATGTTGCCCTTGAGCTTGCC TGGATGAATAATATGATTGACTTTGCTTTCCCGTACCTGTTGCAGTTTATCCGTGAATACACAGGCAAAGTTGATGAACTCGTGAAGTACAAAATTGAGG CGCAGAAAGAAGTCAAGGCCAAAGAGCAGGAAGAGAAGGATGTAATTGCTCAGCAGAACATGTATGCTCAGTTACTTCCTCTTGCTTTGCCTGCACCGCC CATGCCTGGTATGGGTGGACCAACAATGGGAGGAGGTTTTGCTCCACCACCACCCATGGGTGGAATGGGGATGCCTCCAATGCCACCTTTTGGCATGCCA CCGATGGGCAGCTACTGA
AA sequence Show only first row Show all	>Potri.010G186900.1 pacid=42797859 polypeptide=Potri.010G186900.1.p locus=Potri.010G186900 ID=Potri.010G186900.1.v4.1 annot-version=v4.1 MAAANAPITMKEVLTLPAIGISPQFITFTNVTMESDKYICVRETAPQNSVVIIDMNMPMQPLRRPITADSALMNPNSRILALKAQLPGTTQDHLQIFNIE MKAKMKSYQMPEQIVFWKWITPKMLGLVTQTSVYHWSIEGDSEPVKMFERTANLQSNQIINYKCDPSEKWLVLIGIAPGSPERQQLVKGNMQLFSVDQQR SQALEAHAASFAQYKVPGNENPSTLISFATKSFNAGQITSKLHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVAMQISHKYSLIYAITKLGLLFVYDL ETATAVYRNRISPDPIFLTAEASTVGGFYAINRRGQVLLATVNEAMIVPFVSGQLNNLELAVNLAKRGNLPGAENLVVQRFQELFAQTKYKEAAELAAES PQGILRTPDTVAKFQSVPVQPGQTPPLLQYFGTLLTRGKLNAFESLELSRLVVNQNKKNLLENWLAEDKLECTEELGDLVKTVDNDLALKIYIKARATPK VVAAFAERREFDKILIYSKQVGYAPDYLFLLQTILRTDPQGAVNFALMMSQMEGGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLAEHGYLQTKVLE INLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLYIRALQHYTDLPDIKRVIVNTHAIEPQALVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTA KEYCEQLGVDACVKLFEQFKSYEGLYFFLGSYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVAD LTHYLYSSNMLRYIEGYVQKVNPGNAPLVVGQLLDDECAEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDS NNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDEELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPENEYRRQLIDQVVSTALPESKSPE QVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGEVAVEAQLYEEAFAIFKKFNLNVQAVNVLL DNIQSIDRAVEFAFRVEEDAVWSQVAKAQLREGLVSEAIESFIRADDATQFLEVIRAAEDANVYHDLLKYLLMVRQKTKEPKVDSELIFAYAKIDRLSDI EEFILMPNVANLQNVGDRLYDEALYEAARIIFQFIANWAKLASTLVKLKQFQSAVDAARKANSAKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEV SEYYQNRGYFNELISLMESGLGLERAHMGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTIMNHSPEAW DHMQFKDVAVKVANVELYYKAVHFYLQEHPDLINDLLNVLALRVDHTRVVDIMRKAGHLLLVKPYMIAVQSNNVSAVNEALNQIYVEEEDYERLRESIDL HDNFDQIGLAQKIEKHELLEMRRVAAYIYKKAGRWKQSIALSKKDNLYKDAMETASQSGDRELAEELLVYFIEQGKKECFASCLFVCYDLIRPDVALELA WMNNMIDFAFPYLLQFIREYTGKVDELVKYKIEAQKEVKAKEQEEKDVIAQQNMYAQLLPLALPAPPMPGMGGPTMGGGFAPPPPMGGMGMPPMPPFGMP PMGSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11130			Clathrin, heavy chain (.1)		Potri.010G186900 [exp]	0	1
AT4G19180			GDA1/CD39 nucleoside phosphata...		Potri.004G236900 [exp]	2.44	0.8938
AT3G23660			Sec23/Sec24 protein transport ...		Potri.019G003100 [exp]	3.31	0.8799
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	4.47	0.8803	CESA3.1
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.006G165300 [exp]	5.29	0.8987
AT3G11130			Clathrin, heavy chain (.1)		Potri.001G278800 [exp]	5.91	0.8867
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	6.00	0.9118
AT3G48860			unknown protein		Potri.012G105400 [exp]	7.74	0.8444
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	8.48	0.8571
AT5G61970			signal recognition particle-re...		Potri.015G105600 [exp]	8.66	0.8764
AT3G50590			Transducin/WD40 repeat-like su...		Potri.007G041000 [exp]	8.94	0.8893

Compare expression of checked genes

Potri.010G186900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.