Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATEM6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40170 132 / 6e-42 GEA6, ATEM6 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) AT3G51810 96 / 1e-26 AT3, GEA1, ATEM1 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037844 [exp] 140 / 6e-45 AT2G40170 130 / 4e-41 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) Lus10030394 [exp] 140 / 8e-45 AT2G40170 128 / 2e-40 LATE EMBRYOGENESIS ABUNDANT 6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, Stress induced protein (.1) Lus10027816 [exp] 130 / 1e-40 AT3G51810 155 / 8e-50 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) Lus10005044 [exp] 130 / 1e-40 AT3G51810 155 / 8e-50 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1) Lus10000125 [exp] 82 / 3e-22 AT3G51810 89 / 1e-24 GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, Stress induced protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0385 [poplar] [flax] Hydrophilin PF00477 [poplar] [flax] LEA_5 Small hydrophilic plant seed protein
Representative CDS sequence Show only first row Show all	>Potri.010G187100.2 pacid=42797635 polypeptide=Potri.010G187100.2.p locus=Potri.010G187100 ID=Potri.010G187100.2.v4.1 annot-version=v4.1 ATGTCTTCCAATCAACAATTGAGGGAGGAGCTCGATGCCAGGGCAAGGAGAGGAGAGACAGTAATCCCTGGAGGCACTGGGGGTAGAAGCCTTGAAGCCC AAGAACACCTGGCTGAAGTATTATCTTTATTATTTGCAGGGAGGAGCCGTGGAGGACAGACAAGGAAGGAACAGCTAGGGACAGAGGGGTACCAAGAAAT GGGACGCAAGGGTGGGCTTAGCACCACGGATGAGTCTGGTGGAGAACGCGCAGAGAGGGAGGGTATCCCCATCGACGAGTCAAAGTTCAAGACCAAGAGC TAA
AA sequence Show only first row Show all	>Potri.010G187100.2 pacid=42797635 polypeptide=Potri.010G187100.2.p locus=Potri.010G187100 ID=Potri.010G187100.2.v4.1 annot-version=v4.1 MSSNQQLREELDARARRGETVIPGGTGGRSLEAQEHLAEVLSLLFAGRSRGGQTRKEQLGTEGYQEMGRKGGLSTTDESGGERAEREGIPIDESKFKTKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G40170		GEA6, ATEM6	LATE EMBRYOGENESIS ABUNDANT 6,...		Potri.010G187100 [exp]	0	1	Pt-ATEM6.1
AT4G32060			calcium-binding EF hand family...		Potri.018G118008 [exp]	10.39	0.7330
					Potri.011G151550 [exp]	15.23	0.7446
AT1G19530			unknown protein		Potri.002G034500 [exp]	29.59	0.7262
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.002G119000 [exp]	30.29	0.6958
AT5G25360			unknown protein		Potri.018G130900 [exp]	39.79	0.7098
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.001G219200 [exp]	48.57	0.7055
AT5G38895			RING/U-box superfamily protein...		Potri.001G068700 [exp]	49.77	0.6496
AT5G24090		ATCHIA	chitinase A (.1)		Potri.014G092800 [exp]	50.37	0.6595	Pt-CHI3.5
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	52.99	0.6359
AT1G06060			LisH and RanBPM domains contai...		Potri.005G233000 [exp]	53.72	0.7010

Compare expression of checked genes

Potri.010G187100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.