Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55990 660 / 0 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT2G40150 557 / 0 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT2G40160 429 / 1e-147 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G01360 347 / 1e-115 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G11030 344 / 2e-114 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G40320 340 / 3e-113 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT1G73140 330 / 2e-109 TBL31 Plant protein of unknown function (DUF828) (.1) AT5G01620 300 / 3e-97 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G38320 294 / 4e-95 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G58600 233 / 1e-71 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069900 [exp] 791 / 0 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 539 / 0 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.010G187300 [exp] 499 / 1e-174 AT3G55990 511 / 3e-179 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 487 / 2e-170 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070200 [exp] 384 / 6e-130 AT3G55990 430 / 3e-148 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G119100 [exp] 377 / 1e-127 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.008G073300 [exp] 359 / 1e-120 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 348 / 4e-116 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.001G376700 [exp] 341 / 1e-113 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007497 [exp] 653 / 0 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 648 / 0 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10030396 [exp] 628 / 0 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10027813 [exp] 363 / 4e-122 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10005042 [exp] 352 / 1e-117 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10009839 [exp] 344 / 4e-114 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10040953 [exp] 341 / 6e-113 AT2G40320 675 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10022676 [exp] 322 / 7e-106 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10042845 [exp] 313 / 4e-102 AT1G73140 559 / 0.0 Plant protein of unknown function (DUF828) (.1) Lus10028141 [exp] 311 / 2e-101 AT1G73140 563 / 0.0 Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.010G187600.3 pacid=42798491 polypeptide=Potri.010G187600.3.p locus=Potri.010G187600 ID=Potri.010G187600.3.v4.1 annot-version=v4.1 ATGCAGCCATCAAGAAGGAAGTCACCTCTCCTCTCCTCGGTAACCGTAACCATGAAGCACAGGAAGAACAGCAATCTCTCGGTATTTGTTGTCGTGTTCT CTGTATTTCTCTTCGGTGTCTTCATGTACAATGAGGACGTGAAATCCATTGCTGAGTTCCCCTTTTCATGGCCTAAATCTCAAGAAGAGCCATCAAAAGG AGTCACCCCAGTTCAAGAAACCCTCGAGAAGGACCAAGAACTCCCGGCTTCTGTTGGTTCAAGAACTTCATTGGAAGAACCTCAAGTTGATCAGGGCCCT GGAGAAGTTCAAGAATCTGACAACTTGAAGTCTAGTGAATCAAAAGAGGACGAGGAAAAGATTGAATTTCCAGTCATTGAAGAGGATGATGAAGACGTTG AATTGCCACCAGAAGAGTGTGATCTTTTCACGGGACAATGGGTTTTTGACAATGAGACTCGTCCTCTGTATAAAGAAGATGAATGTGAGTTCCTTACAGC ACAAGTGACTTGCATGAGGAATGGAAGAAAGGATTCTTTGTATCAGAATTGGAAATGGCAACCTAGAGATTGTTCTTTGCCGAAGTTCAAGCCAAGGCTA CTGCTAAACAAGTTAAGGAATAAGAGGCTTATGTTTGTTGGGGATTCATTGAATAGGAATCAATGGGAATCAATGGTTTGTTTTGTTCAATCTCTAATCC CTCCTGGAAGGAAGAGTCTGAACAAGACTGGATCTTTAGCTGTGTTCAGAATCGAGGACTATAATGCGACAGTGGAGTTCTATTGGGCCCCATTTCTGGT TGAGTCAAATTCAGACGATCCAAACATGCACAGCATCTTGAATAGGATAATCATGCCTGAATCAATTGATAAACATGGTGTTAATTGGAAGAATGTCGAC TACCTGGTTTTTAACACATACATTTGGTGGATGAACACTTTCAAAATGAAAGTTCTACGTGGCTCGTTTGATGAAGGATCCACCGAGTATGATGAGATCG AACGGCCAGTAGCGTATAGGAGAGTTTTGACTACATGGTCCAAGTGGGTGGAGAAAAATGTGGATACCAATCGTACCACTGTCTTCTTCAGCAGCATGTC TCCTCTTCATATCAAGAGCTTGGACTGGGAGAATCCGGATGGCATAAAATGTGCCAAGGAGACAGCCCCGATTCTGGATGTAAGCATGAAATTTAATTTG GGCACGGACCGCAGGCTTTTTGCGGTTGCAGCCAACATTACTGGATCCATGAAAGTACCTGTCCATTTTATCAACATTACTAAGCTTTCAGAGTACAGAA AAGATGCACATACTTCAGTCTACACTATCCGTCAAGGCAAAATGCTAACACCGGAGCAGCAGGCTGACCCGGCAACGTATGCCGATTGTATTCATTGGTG TCTGCCAGGGTTGCCCGACACGTGGAATGAATTCCTTTACACACGTATAATTTCTCGCACGTGA
AA sequence Show only first row Show all	>Potri.010G187600.3 pacid=42798491 polypeptide=Potri.010G187600.3.p locus=Potri.010G187600 ID=Potri.010G187600.3.v4.1 annot-version=v4.1 MQPSRRKSPLLSSVTVTMKHRKNSNLSVFVVVFSVFLFGVFMYNEDVKSIAEFPFSWPKSQEEPSKGVTPVQETLEKDQELPASVGSRTSLEEPQVDQGP GEVQESDNLKSSESKEDEEKIEFPVIEEDDEDVELPPEECDLFTGQWVFDNETRPLYKEDECEFLTAQVTCMRNGRKDSLYQNWKWQPRDCSLPKFKPRL LLNKLRNKRLMFVGDSLNRNQWESMVCFVQSLIPPGRKSLNKTGSLAVFRIEDYNATVEFYWAPFLVESNSDDPNMHSILNRIIMPESIDKHGVNWKNVD YLVFNTYIWWMNTFKMKVLRGSFDEGSTEYDEIERPVAYRRVLTTWSKWVEKNVDTNRTTVFFSSMSPLHIKSLDWENPDGIKCAKETAPILDVSMKFNL GTDRRLFAVAANITGSMKVPVHFINITKLSEYRKDAHTSVYTIRQGKMLTPEQQADPATYADCIHWCLPGLPDTWNEFLYTRIISRT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	0	1
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.006G062200 [exp]	1.41	0.9177
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G096900 [exp]	5.47	0.8988	LAC1c,Pt-LAC2.3
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.001G042900 [exp]	5.65	0.8896
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	6.40	0.9189
AT2G36880		MAT3	methionine adenosyltransferase...		Potri.006G123200 [exp]	6.48	0.9176	AdoMet6
					Potri.018G139200 [exp]	6.63	0.8977
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G097000 [exp]	8.71	0.8692	Pt-LAC2.2
AT4G38660			Pathogenesis-related thaumatin...		Potri.002G020400 [exp]	9.21	0.9040
AT1G48850		EMB1144	embryo defective 1144, chorism...		Potri.010G221600 [exp]	9.89	0.8907
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	10.24	0.8904

Compare expression of checked genes

Potri.010G187600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.