Plant FIBer expression Database

Potri.010G187700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05570 1069 / 0 transducin family protein / WD-40 repeat family protein (.1.2)
AT4G35560 255 / 4e-70 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G069700
[exp]
1187 / 0 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Potri.016G117800
[exp]
1035 / 0 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Potri.008G069750
[exp]
582 / 0 AT5G05570 377 / 4e-122 transducin family protein / WD-40 repeat family protein (.1.2)
Potri.005G101600
[exp]
301 / 6e-86 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Potri.016G117700
[exp]
87 / 3e-20 AT5G05570 90 / 3e-22 transducin family protein / WD-40 repeat family protein (.1.2)
Potri.006G101600
[exp]
81 / 3e-18 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037841
[exp]
1292 / 0 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Lus10030399
[exp]
1249 / 0 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
Lus10009082
[exp]
368 / 5e-109 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2)
Lus10035989
[exp]
231 / 5e-62 AT4G35560 971 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Lus10001254
[exp]
83 / 4e-18 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2)
Lus10027810
[exp]
81 / 2e-17 AT5G05570 84 / 2e-19 transducin family protein / WD-40 repeat family protein (.1.2)
Lus10002478
[exp]
71 / 1e-14 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0445 SNARE-fusion PF00957 Synaptobrevin Synaptobrevin
Representative CDS sequence
>Potri.010G187700.5 pacid=42799680 polypeptide=Potri.010G187700.5.p locus=Potri.010G187700 ID=Potri.010G187700.5.v4.1 annot-version=v4.1
ATGTTTTCCAAACTCTTTCAAAGAAACACCTCACAACAACAACCACCACCACCTCAGCAACAACCACCAGCGCAACCGCAACCACAACCACAACCACAAC
CACAACCACAACCACCACCACCACCACCACCCGCGGAGGTGCAGGATAATGTGTCAAAGGGAGTATTGACACCTAAAGATATAAATCCACGGATTGCTCT
TCACTATGGGATCCCTTCTACTGCTTCTATTTTAGCTTTTGATCACGTTCAAAGCCTTTTAGCAATTGGAACACTGGATGGCAGAATAAAAGTGATTGGT
GGTAATAACATTGAAGGGCTTCTTGTCTCTCCAAAGCAATCACCCTTTAAATACTTGGAGTTTCTACAAAATCAAGGTTTCCTGGTCAGCGTGTCAAATG
AAAATGAGATTCAGGTTTGGGATTTAGAGCAAAGACGGATTGCTTCCTCTTTACAATGGGAGTCCAACATAACTGCATTCTCTGTTATTTTTTGCTCAAG
TTACATGTATGTTGGAGATGAGTACGGGATGGTGTATGTGTTAAAGTATGATGCTGAAGAAGTTAAACTTGTACCAATGCCATACCATGTTCCTGCAGAT
GTAGCAGCTGATGCATCTGGGATGTCATCACCTAAAAATCGCTCTGTTGTAGGAGTTCTACCCCAACCTTCTTCTCAAGGAAACAAAGTGTTGATTGCAT
ATGAGGATGGATTGATTATTATTTGGGATGTCTCTGAAGATAAAGTTGTTCTAGTTAAAGGGAATAAAGATCTTGAATTGAAATGTAAAATAACAGCTGA
TTCTCACAAAGACACCGGACCTGAGCTTTCTGATGATATATCAGACTATCAGCCATTGGAGAAAGAGATAGCTGCCCTCTGTTGGGCATCTACTGATGGG
TCAGTTCTTGCCGTGGGTTATGTTGATGGAGATATATTGTTGTGGAACCTATCAAGTACTACTTCTGCTAAAGATATGCATGCTGCAAAATCGTCAAATG
ATGTTGTTAAGCTGCTGTTATCCACAGGCGACAGAAGACTCCCTGTCATTGTTTTGCATTGGTCTGCACACAGATCGCATAATGACTGTCGTGGCCGTCT
ATTTGTCTATGGTGGTGATGCAATTGGATCTGAAGAAGCTCTAACGATTTTGAGCCTTGATTGGTCTTCTGGGATAGAAAGTTTAAAATGCACTGGGCGT
GTTGATCTTACTCTTAATGGTTCTTTTGCTGATATGGTTCTTTTACCAAGTGTTGGTGATATGGGAACTTCTAGCACTTTGATATTAACGAATCCAGGAC
AGCTGAATCTTTATAACGATGCTGGCTTGTCTTCCTCAATATCCCTGCTGGAGAAAAGGAATTATGTTTCTTCTATACAGTACCCTATGGTCATACCTAC
TATTGAACCACAATTAACTCTGGCAAAACTTGGTCTGGTCTTTAGAGATGGGAAGTTCTCAAAGGCTCTTTCTAAGGAAATTTCTTCTAGAAAACTTCAA
GCAACACATTGTCCCAGAAGTACAAATTGGCCATTGACTGGTGGAGTTCCCAGCCAACTTCAAGATGCAGAAAAGTATCAGGTTGAGAGATTATATATGG
CAGGTTACCAAGATGGAACTGTAAAAATATGGGATGCCACATATCCAACATTTGCGCTCATATATGTTTTAGGACCTGAGGTCAAAGGTATCAATGTCGC
TGATGCTGATGCTAATGCATCAGTATCTGCTTTGGAGTTTTGCTCAGATACCTTAAGTTTAGCTATTGGCAATGAGCGTGGTATGGTTTGTCTATATAAG
CTTGTACGGAGTGCTGATGAGATGACTTTGAAGTTCGTGACAGGAACTGAAAAAGAGGTCTACACTCTGGACCAAGGGGATGGACCTCAATGTACAGCTG
TATTTTCCTTCCTAAGTTCTCCTATATATGCTCTGCAATTTGCAAATTTTGGAACCAGACTTGCTGTGGGATTTCATTGTTCCCAGGTAGCACTGCTCGA
CACTAGTACATCATCAGTGTTGTTTCTTACTGACAGTCTATCTGGCTCCAATTCACCTATCACTTCTCTGGCTGTGAGAGTGTTTTCAGATTCTAGTGAC
TTAATAAATAATCGAGAGGACACTGAATCCAAAACTATGGAAGATCATGTACGGTTGGAAGTGTTTGTTATGACCAAAGATGCCCATACTGTTGTCATAG
ATGGCAACACTGGTGGTATTCTCTGCTCCCAATCAATAAAATCTGAAAAGGAACTGACTTCACCATCACTGTATATCATGGAAGGTGATGACTTGATCTC
CGAAATGTCTAGTGGAAAACATGTATCTAATTCATCTCAGAAAAGCGAAGCTAAAAGTGAACCTGTCCCAGATGTTGCTTGCAGTGAAAGTGCTCCACTT
AAAGTTGACCATGAGGCCTCTGCCAAAGCTTCCCATTTTAAGCAGAGAGTCGAAAATTTTCTTCTTTTGTTTTGTTGTGAGGATGCATTGGATTTGTACT
CTTTGAATGAGGTGGACATTAATCCTATTCGAAAGGTAAATCTCATGAAACCATGCTGTTGGAGTACACAGTTCAAGAAGGATGATAAAGACTGTGGGGT
CATTTTACTCTATCAGACTGGAGAGATTGAAATAAGATCTTTACCAGATCTTGAAGTGGTTGGAGAAAGCTCTTTAATGTCAATCCTAAGGTGGAACTTC
AAGACTAATATGGAGAAGACAATATGTTCATCTGAAAATGCGCAGATTATTCTGGTAAATGGGTGTGAATTTGCTGCTATATCTCTTTTGGCCTGTGAAA
ATGACTTCAGGATCCCAGAGTCGTTGCCTAGCCTTCATGATAAACTACTTACAGCTGCTGCTGATGCCACTATCAGTTTATCTCCCAATCAGAAGATAAC
ACAGGGTGCTTCCTCTGGAATTTTAGGTGGTTTGGTTAAGGGGTTCCAAGGGAGCATGGCAGAGCACGATGTAGATCTTTTTGAAGTTTGTAAGAATAAT
TTTGCACATTTAGAGGGCATATTTTCCAGCCCTCCTTTCTTAAAGCCTTCCATCGACCTTGTGGATGACCAAAAAGTTGTGGAGCTTCGTATAGATGACA
TTGATATTGATGAACCTCTATTTGTCTCATCTTCATCTGAAATGATGAGCAAGAATGATACTAAAGATAGGGGAACAGAAAGGGAAAGATTATTTGAAGG
TGCAAGTACTGATTCACAGCCAAAGCTCAAAACAGCTGATGAAATTAAGGCTAAATATAGGAAGGAGGATGTCTCTGCTGTAGCTGCACGTGCAAAGGAT
AAGCTCATACAACGCCAGGAGAAGCTTGAGAGGCTCAGTGAGCGTACAGCCGAGTTGCAGAGTGGGGCTGAAAACTTTGGATCAATGGCTAATGAACTTG
CCAAGCAAATGGAGAAACGCAAATGGTGGAACATTTGA
AA sequence
>Potri.010G187700.5 pacid=42799680 polypeptide=Potri.010G187700.5.p locus=Potri.010G187700 ID=Potri.010G187700.5.v4.1 annot-version=v4.1
MFSKLFQRNTSQQQPPPPQQQPPAQPQPQPQPQPQPQPPPPPPPAEVQDNVSKGVLTPKDINPRIALHYGIPSTASILAFDHVQSLLAIGTLDGRIKVIG
GNNIEGLLVSPKQSPFKYLEFLQNQGFLVSVSNENEIQVWDLEQRRIASSLQWESNITAFSVIFCSSYMYVGDEYGMVYVLKYDAEEVKLVPMPYHVPAD
VAADASGMSSPKNRSVVGVLPQPSSQGNKVLIAYEDGLIIIWDVSEDKVVLVKGNKDLELKCKITADSHKDTGPELSDDISDYQPLEKEIAALCWASTDG
SVLAVGYVDGDILLWNLSSTTSAKDMHAAKSSNDVVKLLLSTGDRRLPVIVLHWSAHRSHNDCRGRLFVYGGDAIGSEEALTILSLDWSSGIESLKCTGR
VDLTLNGSFADMVLLPSVGDMGTSSTLILTNPGQLNLYNDAGLSSSISLLEKRNYVSSIQYPMVIPTIEPQLTLAKLGLVFRDGKFSKALSKEISSRKLQ
ATHCPRSTNWPLTGGVPSQLQDAEKYQVERLYMAGYQDGTVKIWDATYPTFALIYVLGPEVKGINVADADANASVSALEFCSDTLSLAIGNERGMVCLYK
LVRSADEMTLKFVTGTEKEVYTLDQGDGPQCTAVFSFLSSPIYALQFANFGTRLAVGFHCSQVALLDTSTSSVLFLTDSLSGSNSPITSLAVRVFSDSSD
LINNREDTESKTMEDHVRLEVFVMTKDAHTVVIDGNTGGILCSQSIKSEKELTSPSLYIMEGDDLISEMSSGKHVSNSSQKSEAKSEPVPDVACSESAPL
KVDHEASAKASHFKQRVENFLLLFCCEDALDLYSLNEVDINPIRKVNLMKPCCWSTQFKKDDKDCGVILLYQTGEIEIRSLPDLEVVGESSLMSILRWNF
KTNMEKTICSSENAQIILVNGCEFAAISLLACENDFRIPESLPSLHDKLLTAAADATISLSPNQKITQGASSGILGGLVKGFQGSMAEHDVDLFEVCKNN
FAHLEGIFSSPPFLKPSIDLVDDQKVVELRIDDIDIDEPLFVSSSSEMMSKNDTKDRGTERERLFEGASTDSQPKLKTADEIKAKYRKEDVSAVAARAKD
KLIQRQEKLERLSERTAELQSGAENFGSMANELAKQMEKRKWWNI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05570 transducin family protein / WD... Potri.010G187700
[exp]
0 1
AT5G35980 YAK1 yeast YAK1-related gene 1 (.1.... Potri.019G043400
[exp]
3.46 0.7116
AT4G11670 Protein of unknown function (D... Potri.001G108400
[exp]
4.24 0.7505
AT5G07920 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacy... Potri.012G066300
[exp]
4.89 0.7311 ATDGK1.1
AT3G06290 AtSAC3B yeast Sac3 homolog B, SAC3/GAN... Potri.010G028200
[exp]
7.48 0.7347
AT3G09760 RING/U-box superfamily protein... Potri.006G129000
[exp]
7.93 0.7083
AT5G03540 ATEXO70A1 exocyst subunit exo70 family p... Potri.008G017800
[exp]
10.81 0.6192
AT5G15380 DRM1 domains rearranged methylase 1... Potri.001G347000
[exp]
12.64 0.6690
AT3G13050 AtNiaP nicotinate transporter, Major ... Potri.018G151700
[exp]
12.96 0.6819
AT3G07650 CO COL9 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500
[exp]
14.86 0.6829
AT1G67560 ATLOX6, LOX6 Arabidopsis thaliana lipoxygen... Potri.008G178000
[exp]
17.00 0.6681

Potri.010G187700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.