Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07200 624 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G29970 621 / 0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 425 / 2e-137 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57710 189 / 7e-49 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 160 / 6e-40 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 138 / 5e-33 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57130 100 / 4e-21 Clp amino terminal domain-containing protein (.1) AT4G29920 100 / 6e-21 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50920 70 / 1e-11 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 69 / 1e-11 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G069100 [exp] 1859 / 0 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G252500 [exp] 834 / 0 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G046700 [exp] 825 / 0 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 177 / 3e-45 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G140900 [exp] 169 / 1e-42 AT5G57130 751 / 0.0 Clp amino terminal domain-containing protein (.1) Potri.006G175200 [exp] 162 / 2e-40 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 152 / 2e-37 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 145 / 2e-35 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G017600 [exp] 124 / 1e-28 AT3G52490 635 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040206 [exp] 923 / 0 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028281 [exp] 763 / 0 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10038320 [exp] 642 / 0 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10036183 [exp] 545 / 2e-177 AT2G29970 566 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 194 / 2e-50 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015511 [exp] 187 / 3e-48 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 116 / 2e-26 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008970 [exp] 117 / 4e-26 AT3G52490 460 / 1e-147 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10028849 [exp] 112 / 4e-25 AT3G52490 498 / 5e-165 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 111 / 1e-24 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF07724 [poplar] [flax] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Potri.010G188200.1 pacid=42797976 polypeptide=Potri.010G188200.1.p locus=Potri.010G188200 ID=Potri.010G188200.1.v4.1 annot-version=v4.1 ATGCCTACGCCGGTAACTACAGCGAGGCAATGCTTAACTGAAGAAGCAGGTCACGCGCTCGACGAGGCAGTGAACGTCGCTCGCCGAAGAGGACATGGTC AAACTACGTCGCTTCATGCCGTCTCGGCTCTCTTATCACTCCCTTCGTCACCTTTACGTGACGCGTGCGCGCGTGCGAGGAATTCTGCGTACTCATCGAG ACTTCAGTTCAAAGCGCTCGAGCTCTGCCTCGGTGTGTCACTAGACCGAGTGCCGACGAGTCAACTCAGCGATGACTCACCTCCCGTTTCGAACTCGCTT ATGGCTGCTATTAAACGGTCCCAAGCGAACCAGAGGAGACAGCCTGAGAATTTCAATCTGTATCATCAAATTCAACAGCAGCAACAACAATCGTCTTCCT CAATTTCTTGTATTAAAGTGGAACTTCAGAATTTGATTCTATCGATTTTGGATGATCCGGTTGTGAGCCGGGTTTTTGGTGAAGCGGGATTTCGGAGCTC CGAAATCAAGTTGGCTATTGTTAGGCCGTTACCGCAGGTTTTTAAATTTTCCTCGTCACGTTTCAAAGGCCCGCCTTTGTTTTTATGTAATTTATTATCA AGCGAGGATCCGGATTCGTTATATTCGGGTCCGGGTCGGAGGGGTGTTTTCAGTTTTCCATTTTCGGGCGGGTTGTTTCTTAACAACAACAGCAACAATA ATAATGGGGATGCTAATTGTAGGAGAATTGGTGAGGTTTTAGCAAGAAACAAAGGGAGGAATCCTCTGCTTGTAGGTTTATCTGCTTATCATACACTTGC AAGTTTCAGTGAGATGGTAGAGAAAAGAAAAGAGAATGTCTTGCCTGTTGAGTTATGTGGATTAAGTGTCATCTGCATGGAAAGTGATGTTAATAAGTTT ATAACAAGTGAGAATTTCGATAAAAAGTGTGTGGATTTGAGGTTTGAGGAGTTGGGTCAATTTGTGGAGAAAAGTTTAGGACCTGGGTTGTTGGCGAATT TTGGTGACTTGAAGGCATTTGTTAGTAACGACGATCATAATAATGGTATGGATGATGCCGTTAGTTATGTTATCGAGAAATTGACAAAGTTGTTGCAGTT ATATGGAGGAAGAGTGTGGCTTATCGGTGCGGCGAGCTACGAGAACTATTCCAAGTTTGTTGGAAGATTTCCTTCCACTGAAAAAGATTGGGACTTGCAG CTCTTGCCTATCACTTCTCTCAGGACTCCTTCCGTGGCTGAATCTTATCCCAGGTCAAGCTTGATGGAGTCATTTGTTCCATTCGGTGGGTTCTTCTCTA CACCTTCTGACTTGAATGCCCCTTTAAATAGATCATGCAAGTATTTACCCCGTTGTCATCTATGCAACGAGAAGTGCGAACAAGAAATACTTTCTGTTTC AAAGGGAGGATTCATTGGTTCAGTAGCAGACCAGCACCAATCTAGCTTGCCTACTTGGATGGAGATGGCTGAAATTGGCACAAACAAGGGACTGGATGCG AAGACCAGAGATGATGGAATGGTATTGAGTACCAGAGTTGCAGGTCTGCAAAGGAAATGGGACAGTATATGTCAGCGTCTTCATCACACCCAACCACCTG GGTCAAATACTCATCCCCCTCAGTTTCCAGCTGTCGCGGGCTTTCAGCTGGTCGAAGATGAAAAGGAAGATGCTGAAAATCTCAGCAGCAAAGATACAAG TGCACTGCCAAATGGAAACAGATGTGTGAATGTAAATTCATACATTCCCTCTGACTTACAGAAGACATCGAGAAAGCAGTTAGGTTTCTCTCTTCCTGTT GTTTCTGAGGCTAGGAGTGATAGCATTCTATCCAAGCAATGGGAAAAACCTTCCAAAGAAGAAGATCTCGGGTCAAGTGGCCTCAGATCTCCATATAGTT TTTCCAATTCATGCATGGTTGATGGTAGTCAAGCATCTCCTACATCCGTGACTTCTGTGGCCACAGATTTGGGGTTGAGGATAAGTTCTATTGGTAATGA ACTGAAGAAAACTGTAAACCAAAACCACATGGAGCTTCCACATGACTTGTCAGGTTCTTTTTCAGCAAACGTTGATCTTGTGCATGGGAGTATCTCTGAC CATCGGGCTCGATCATCATCATCTTCTTCTCCTGTCTTTGGTGGGCAGTTTGATCCCAGTAATGCAAAGATGCTCTTTAGAGCTGTTGTTGAAAGAGTTG GCTGGCAAGATGAAGCAATACGCATTATTAGCCAAACAATTGCTCACTGCAGGGCAATAAATGAGAAACGCCAGGGAGCAAGTCTCAGAGGGGATATTTG GTTCAGTTTCTGTGGACCTGATAGATGTGGGAAAAAGAAAATTGCTTCCGCCCTTGCTGAGGTCATATATGGAAGTAGGGAAAACTTTATTTCTGCAGAT TTAAGTAGCCAAGATGGGATGGTTCATGCCCACATGGTCTTTGACCGCCCAGAGATGAGTGGCTACACTGTAAAGTTTAGGGGGAAGACCATGGTTGATT TTGTTGCTGGGGAGCTGTGCAAGAAGCCCTTGTCCATTGTGTTTCTTGAAAATATAGACAAGGCAGATGTGCAGGCTCAGAAGAGCTTGTCGCAAGCTAT TCAGACTGGTAAATTTGCAGATTCCCATGGGAGAGAAGTTGGAATCAGCAATGCAATATTCGTGACAACTTCAACATTGACAGAGGATAAAGTTGGCTCT TCTAGCAATGATTTCTCCACCTATTCTGAGGAGAGAATATTGAAAGCCAAAGACTGGCCAATGAAGATATTAATTGAACGAGTTCTTGATGAAGAAATGG GCCAAGTTATTACTCCAATCACTGCGAAAAAGGACATCCCAAGTTCTATCTTTTTGAATAAAAGAAAGCTGGTTGGGGCAAACCAAAATCTTGACCGCCA AGAAATCACAGAGATGGTGAAACGAGCTCATAAGATGTCAGCTAGGAATCTAGATTTGAACCTTCCTGCCGGAGAGAATGACTTGCCAGACACCGATGAT GGAAACTCTGATAATGATCCTGAATCTGATATCTCCAAGGCTTGGTTGCAAGGTTTTCTTGAACAAGTGGACGCAAGAGTGTTTTTCAAGCCTTTTGATT TTGATGCTCTTGCCGAGAGAATATTGAATGAGGTTAATGGGTGCTTCCACAAGATTGTAGGCTGGGAATGTTTGCTAGATATTGATCCAAAAGTCATGGA GCAATTACTTGCAGCTACCTATTTATCCGATCAAAATAGAGTGGTTGAGGACTGGGTAGAGCAAGTTCTTGGTTGGGGATTTGTGGAAGTTTTGAGAAGG CACAGCCTGAATGCAAATTCTATCGTGAAACTTGTTGCCTGCAAGAGCTTATTTTTGGAAGGACGCATGCCAGGGGTTTACCTTCCGACAAAAATCATTA TCAACTGA
AA sequence Show only first row Show all	>Potri.010G188200.1 pacid=42797976 polypeptide=Potri.010G188200.1.p locus=Potri.010G188200 ID=Potri.010G188200.1.v4.1 annot-version=v4.1 MPTPVTTARQCLTEEAGHALDEAVNVARRRGHGQTTSLHAVSALLSLPSSPLRDACARARNSAYSSRLQFKALELCLGVSLDRVPTSQLSDDSPPVSNSL MAAIKRSQANQRRQPENFNLYHQIQQQQQQSSSSISCIKVELQNLILSILDDPVVSRVFGEAGFRSSEIKLAIVRPLPQVFKFSSSRFKGPPLFLCNLLS SEDPDSLYSGPGRRGVFSFPFSGGLFLNNNSNNNNGDANCRRIGEVLARNKGRNPLLVGLSAYHTLASFSEMVEKRKENVLPVELCGLSVICMESDVNKF ITSENFDKKCVDLRFEELGQFVEKSLGPGLLANFGDLKAFVSNDDHNNGMDDAVSYVIEKLTKLLQLYGGRVWLIGAASYENYSKFVGRFPSTEKDWDLQ LLPITSLRTPSVAESYPRSSLMESFVPFGGFFSTPSDLNAPLNRSCKYLPRCHLCNEKCEQEILSVSKGGFIGSVADQHQSSLPTWMEMAEIGTNKGLDA KTRDDGMVLSTRVAGLQRKWDSICQRLHHTQPPGSNTHPPQFPAVAGFQLVEDEKEDAENLSSKDTSALPNGNRCVNVNSYIPSDLQKTSRKQLGFSLPV VSEARSDSILSKQWEKPSKEEDLGSSGLRSPYSFSNSCMVDGSQASPTSVTSVATDLGLRISSIGNELKKTVNQNHMELPHDLSGSFSANVDLVHGSISD HRARSSSSSSPVFGGQFDPSNAKMLFRAVVERVGWQDEAIRIISQTIAHCRAINEKRQGASLRGDIWFSFCGPDRCGKKKIASALAEVIYGSRENFISAD LSSQDGMVHAHMVFDRPEMSGYTVKFRGKTMVDFVAGELCKKPLSIVFLENIDKADVQAQKSLSQAIQTGKFADSHGREVGISNAIFVTTSTLTEDKVGS SSNDFSTYSEERILKAKDWPMKILIERVLDEEMGQVITPITAKKDIPSSIFLNKRKLVGANQNLDRQEITEMVKRAHKMSARNLDLNLPAGENDLPDTDD GNSDNDPESDISKAWLQGFLEQVDARVFFKPFDFDALAERILNEVNGCFHKIVGWECLLDIDPKVMEQLLAATYLSDQNRVVEDWVEQVLGWGFVEVLRR HSLNANSIVKLVACKSLFLEGRMPGVYLPTKIIIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07200			Double Clp-N motif-containing ...		Potri.010G188200 [exp]	0	1
AT2G29970			Double Clp-N motif-containing ...		Potri.008G069100 [exp]	1.00	0.9138
AT3G54450			Major facilitator superfamily ...		Potri.001G027100 [exp]	4.69	0.8776
AT5G45030			Trypsin family protein (.1.2)		Potri.012G121700 [exp]	5.47	0.8019
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Potri.003G030400 [exp]	6.00	0.7917
AT4G27290			S-locus lectin protein kinase ...		Potri.011G154400 [exp]	6.63	0.8389
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Potri.001G027232 [exp]	7.54	0.8558
					Potri.010G147200 [exp]	12.00	0.8309
AT5G39390			Leucine-rich repeat protein ki...		Potri.019G100901 [exp]	12.40	0.7862
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Potri.016G112300 [exp]	12.84	0.7983
AT5G06570			alpha/beta-Hydrolases superfam...		Potri.016G065000 [exp]	13.07	0.7828

Compare expression of checked genes

Potri.010G188200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.